Im trying to run Mort Canty's http://mcanty.homepage.t-online.de/ Python iMAD implementation on bitemporal RapidEye Multispectral images. Which basically calculates the canonical correlation for the two images and then substracts them. The problem I'm having is that the images are of 5000 x 5000 x 5 (bands) pixels. If I try to run this on the whole image I get a memory error.
Would the use of something like pyTables help me with this?
What Mort Canty's code tries to do is that it loads the images using gdal and then stores them in an 10 x 25,000,000 array.
# initial weights wt = ones(cols*rows) # data array (transposed so observations are columns) dm = zeros((2*bands,cols*rows)) k = 0 for b in pos: band1 = inDataset1.GetRasterBand(b+1) band1 = band1.ReadAsArray(x0,y0,cols,rows).astype(float) dm[k,:] = ravel(band1) band2 = inDataset2.GetRasterBand(b+1) band2 = band2.ReadAsArray(x0,y0,cols,rows).astype(float) dm[bands+k,:] = ravel(band2) k += 1
Even just creating a 10 x 25,000,000 numpy array of floats throws a memory error. Anyone have a good idea of how to get around this?