I got stripes in my topographic corrected Landsat images (see second image below). I used SAGA GIS 2.0.8 at xubuntu 12.04
Image and DEM are in the same projection, tried it with EPSG:32636 and EPSG:4326


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Compare the resolution of the image and the DEM (open the image/DEM and look a the description under "cell size"). It should be the same, if not: Align the resolution of the image and the DEM using (SAGA)
"Grid" -> "Construction" -> "Resampling"
Then choose the image or DEM you want to resample and set "user defined" at "Target Grid" and start. A new window opens. At "Cellsize" write the resolution you want (in my case it was the resolution of the Landsat image with 30m per pixel).
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