Questions about data from the Moderate-Resolution Imaging Spectroradiometer sensors aboard the Terra and Aqua satellites.

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7 views

How to extract EVI from MODIS hdf data from several time using MRT?

I have been using Modis Reprojection Tool (MRT) to extract EVI from MODIS hdf files. So I have 23 MODIS hdf files from 1 year (16 days temporal) but from the same scene (h28v09). How to extract EVI ...
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0answers
9 views

Land-Water mask for MODIS 0.05deg grid

I need to create a worldwide land-water mask for a series of MODIS LST/VI images (0.05 deg). I know that each MODIS hdf file contains a land-water mask. However, this mask changes between different ...
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0answers
9 views

MODISTool R Error: Can't call method “prepare”

I have already used Modistool in R a few times, but lately I am facing the following error while using the function GetProducts(), GetBands(Product = "MOD13Q1") MODISTools::GetProducts() Error in ...
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1answer
41 views

smoothing raster layer stack using R

I'm trying to do smoothing for .tif stack layer of 331 bands. I used this code in R : setwd("D:\\") raster_dir <- "D:\\Modis VI quality\\" VI <- ...
0
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0answers
26 views

Smooth raster stack

How can I smooth a raster stack of 300 bands using R/Arcgis/Envi? I used this code: setwd("D:\\") raster_dir <- "D:\\Modis VI quality\\" x <- brick(paste(raster_dir, ...
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1answer
19 views

Raster Mosaic fault using R

I'm trying to mosaic two raster images using R. I used this script: setwd("D:\\Modis EVI\\") raster_dir <- "D:\\Modis EVI\\" r1 <- brick(paste(raster_dir,"evi8_stack.tif", sep="")) r2 <- ...
-1
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0answers
21 views

How to convert .HDF to .Tiff and keep the number of the output files exactly as the input?

I have 332 .HDF files that I have processed in R to convert them to .Tiff. It has worked fine, however, the number of output files are not the same as the number of the input files! Input is 332, ...
0
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1answer
30 views

how to create raster stack using R

I have 300 .tiff files, that i need to create raster stack of them. Can you please help me with R code for that? I can do in Arcgis, Envi, R. I have tried: setwd("F:\\MODIS\\Modis EVI\\HDF8 EVI") ...
2
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1answer
36 views

MODIS temperature and NDVI data?

hope anyone could give me some hints here. I tried to download free MODIS data from their page(resolution 500m, 1km). Im interested in NDVI and temperature data. But when i load the hdf files into my ...
2
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1answer
51 views

Recommendation for getting TIF raster from modis HDF, for processing in R

I've downloaded a set of modis mod13q1 HDF files, e.g. MOD13Q1.A2016097.h11v05.006.2016114040325.hdf. I'd like to load the 250m_16_days_EVI and 250m_16_days_pixel_reliability bands into R as rasters. ...
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48 views

how to convert the values of NDVI anomalies in percentage?

I have used NDVI-MODIS MOD13Q1 product to calculate NDVI anomaly for 13 years (2000-2012). I multiplied the product with the scale factor 0.0001. the problem that I am facing is that the, High and ...
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0answers
13 views

MODIS MCD43A3 albedo product: good quality observation and fill value at the same time?

I’m using the MODIS MCD43A3 albedo product on one of my projects. I only used the good-quality values determined based on the BRDF_Albedo_Quality band recorded in the associated MCD43A2 product. ...
1
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1answer
39 views

MODIS data with .hdf extension not compiling in Ubuntu

I am trying to use GDAL to read .hdf file, but it does not seem to recognize the extension. It works fine in Windows system. The GDAL open command gives the following error message: ERROR 4: ...
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0answers
62 views

Troubling using MODIS package in R (mac). Error with gdal

I'm new to using MODIS data, and have been trying to set up a a way to use the HDF files produced by MODIS on R. I had trouble with gdal (could only download the package through system dialog), and ...
0
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1answer
45 views

Downloading MODIS data of cloud cover less than 10%

I use ModisDownload from rts package for downloading MODIS data. But is it possible to specify cloud cover and view angle before downloading? e.g. if I want to download MODIS data for cloud cover less ...
1
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0answers
45 views

MODIS Quality Control in QGIS

I have to process 46 MODIS MOD15A2H images (leaf area index) in QGIS 2.12 Lyon. I have to clean the images from bad pixels using MODIS Quality Control. Is there any method to automate the process for ...
1
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1answer
55 views

Calculating maximum value in Raster Calculator of ArcGIS for Desktop?

I have MODIS NDVI data of four months and I have to calculate NDVImax. I am using the Raster Calculator of ArcGIS and have been using various algorithms like [MAX ("june2000", "july2000" , ...
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1answer
60 views

GDAL 2.0.1/QGIS 2.14.0 on OSX won't open MODIS HDF?

I'm on OSX 10.9.4, using GDAL 2.0.1 from the terminal. I want to mosaic MCD12Q1 HDFs together with GDAL but my build can't even read them. The file: ...
1
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1answer
61 views

Doubt in MODIS NDVI range [duplicate]

MODIS-NDVI product MOD13Q1 shows range from -1986 to 9976 but NDVI ranges from -1 to 1. What these value means? What do I need to do as corrections? I have attached an image showing MODIS-NDVI ranges ...
2
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1answer
43 views

How do you extract the mean fire frequency (raster) for each point within a given buffer size using R?

I am trying to extract fire data (mean and max fire frequency) for each point within a given buffer size (250m) around multiple points. Currently, my point data is in Lat and Long. For the raster ...
0
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0answers
55 views

Time series linear interpolation method for cloud not processing properly in my MODIS dataset

I am trying to perform an interpolation to my 3D array (sub-block of MODIS time series dataset with a shape of (46,960,960)) using numpy linear interpolation method to replace cloud pixels with ...
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0answers
19 views

Why there is a shif in MODIS coordinate (compared with Landsat/google earth image) after mosaicing and subsetiing the study area?

I am facing some difficulties in processing MODIS data set. To have MODIS data over my study area, I need to mosaic two tiles of MODIS (h29 v12 and h30 v12). I have used the MRT tool by NASA (the ...
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2answers
42 views

Modis MOD11A1 band math expression

I am trying to calculate the temperature of MOD11A1 and I can't find the expression of band math. How the expression temp < 273 could be written at band math?
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0answers
92 views

MODIS R Package: GDAL Not Available

I am trying to analyze the MODIS EVI 250m, 16day dataset. I found the R MODIS package and am following the instructions here: ...
1
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1answer
35 views

WMS for Active Fire Data from NASA site - Can't connect

I am trying to connect to the WMS service of the Active Fire Data that NASA provides. This is the site: https://firms.modaps.eosdis.nasa.gov/web-services/#firms-wms where I get the links from. My ...
4
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0answers
43 views

How to reproject MODIS L2 data with lat/lon

I downloaded the MODIS level 2 data for precipitable water vapor (MOD05_L2.A2015193.1535.006.2015194020321.hdf) and the corresponding geolocation file (MOD03.A2015193.1535.006.2015193213734.hdf). When ...
1
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0answers
20 views

MOD09A1 QC layer

Does anyone know how to handle MOD09A1 Quality flags (QC) in in R? I was trying to use raster package but unable to unlock the QC band.
1
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1answer
28 views

transformations from a sphere using R for raster and polygon data [duplicate]

I am planning on using the MODIS burned area products which were produced by Maryland University. These come as either polygons or rasters. In the user guide it says A shapefile version of the MCD45 ...
0
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0answers
11 views

Corrupt XML files on LP DAAC server

I have built a Python script to pull MODIS data off the LP DAAC server. The script works fine in most locations, but when I tried to pull data for Bangladesh (h26v06), my code threw errors. I ...
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2answers
65 views

MODIS MOD11A1 Reproject Change Data Value

I'm import and reprojected MOD11A1 with GDAL 1.10....my shell script is easy.. for file in *.hdf; do echo "map: $file" gdal_translate -of Gtiff -ot Int16 ...
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1answer
107 views

How do I subset image by vector layer using Erdas Imagine?

I have downloaded MODIS MOD10A2 8 day snow cover image. I need to subset this image. I tried to subset the image in erdas. it says the AOI layer is empty.
1
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1answer
32 views

How to determine the appropriate size of a 3 dimesional raster block/chunk

I am processing large MODIS time series (12 years) dataset with an array dimension of 4800 x 4800 with a data type of Int16-Sixteen bit signed integer. I want to build a 3 dimensional array ...
1
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1answer
37 views

Adding Subdatasets in ArcMap

I have some MODIS imagery that I want to display in true colour, however when I add the data it gives me 13 subdatsets to choose from. I've never worked with this before and I'm not sure which ...
1
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0answers
19 views

What is causing LDOPE error when opening .hdf files?

I get the following error when I try using LDOPE-1.7 on Linux (64 bit) with Modis QA data. The specific dataset resides in the LDOPE-1.7 directory. bash-4.1$ ./unpack_sds_bits -of=ldopeQA.hdf ...
1
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2answers
42 views

gdalinfo for Modis layer “NDVI”

I am trying the following command to get info on the NDVI MODIS layer stored in HDF file. I always receive an error. the command and error as below: gdalinfo ...
0
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0answers
26 views

SDS for quality assurance MODIS data

Can anyone help me with which quality assurance data to use for MODIS MCD43A4? The QA dataset for this is MCD43A2 which has 4 SDS - Science Data Sets (HDF Layers) 4 UNITS BIT TYPE FILL ...
4
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1answer
32 views

Gdal_translate command for SDS having spaces in its name

Can anyone help me with using gdal_translate on an HDF4 dataset that a space? One SDS in the the HDF is: ...
0
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1answer
61 views

NDVI colour scheme for ArcGIS

Does anyone have a download link for the NDVI colour scheme to use in ArcGIS for Desktop? I am looking for MODIS mod13 data and cannot find an appropriate colour scheme in the programme.
4
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2answers
76 views

Accessing the Quality Band for MCD12Q1 with MODISTools GetBands

I am using MODISTools (https://github.com/seantuck12/MODISTools) to process MCD12Q1 data, which, according to the LP DAAC website ...
1
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0answers
33 views

Retaining resolution of MODIS data while reprojecting using gdalwarp

Can anyone help me to use gdal(gdalwarp specifically) for reprojection? I am using it to reproject MODIS data : I originally have an hdf file - MCD43A4.A2005001.h08v05.005.2007351192333.hdf which has ...
1
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0answers
62 views

How to mosaic multiple MODIS images of Multiple months using MRT tool?

I have monthly MODIS images for 2001-2014. For few images mosaicing with reprojection can be done using MRT tool. However, for large number of images it's a cumbersome process. There are multiple ...
0
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2answers
261 views

extract scientific layers from MODIS HDF Dataeset using Python GDAL

I have been trying to extract scientific data layers from MODIS HDF files but without success. Before I have been doing this type of task using Arcpy, but I want the script that I am currently working ...
4
votes
2answers
273 views

Reconstructing MODIS time-series applying Savitzky-Golay Filter with Python/Numpy

I want to apply the 'Savitzky-Golay' (savgol) filter to my time series, MODIS dataset, to remove noise (i.e., cloud pixels, etc.) in my data. MODIS have quality flags that indicates the reliability of ...
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0answers
35 views

How to apply/mask QC layer of MODIS15A2 for extracting good quality pixels from Leaf Area Index product

How to mask cloudy/noise pixels of MODIS LAI product (MODIS 15A2). I'm using MODIS 15A2 LAI monthly data for LAI estimation. After reprojection and applying scale factor I want to mask bad pixels of ...
0
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1answer
212 views

How to download the MODIS data from R using MODISTools library

I want to download MODIS product MOD13Q1 to use the Scientific Data Sets (SDS) layers of "250m_16_days_EVI", "250m_16_days_pixel_reliability". MODISTools library in R software provides the capability ...
4
votes
2answers
130 views

How to correctly parse MODIS QA layers?

I'd like to correctly parse the MOD13Q1 VI Quality layer (see Table 2 in "layers" here). For this, I'm trying to follow Example 1 from this tutorial (page 10). I'll illustrate my problem with a pixel ...
4
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2answers
163 views

Merging rasters in QGIS?

I have 3 modis tiles that I want to merge together. They were all reprojected in the same CRS (from sinusoidal to WGS84 UTM zone 32 N), but I cannot succeed. I have tried with merge and virtual ...
2
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0answers
53 views

TIMESAT seasonality data (MODIS EVI)

I am trying to get seasonality parameters from MODIS EVI (MOD13Q1) for Indonesia. I have loaded data from 2013-2015, but the plotted time-series is shifted from what I expect. Indonesia has ...
0
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4answers
71 views

How to remove NoData areas from modis 09 data?

I have mosaicked modis09 rasters that have areas of NoData values displayed in black, I have used every option possible from raster con and set null conditions in raster calculator to setting the ...
5
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1answer
187 views

Reprojecting MODIS-Sphere ESRI GRID file to WGS84 using QGIS/GDAL

I have an ESRI GRID file projected in MODIS-Sphere (here's the dataset http://urban.yale.edu/sites/default/files/data/setoguneralphutyra_uf.zip) that I need to convert to a WGS84 GeoTIFF. I tried ...