NetCDF (Network Common Data Form) is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

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Global NetCDF datasets with station time series data?

I´m working on a web application which uses temperatur and precipitation data. Currently i´m using only globally interpolated, multidimensional rasterdata from terrestrial stations (queried with ...
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Failed to create a raster-brick from a netCDF file (.nc)

I am trying to build a raster-brick from a netCDF file (network Common Data Form) leave this link for more information () but to make a brick (which is part of the package raster) throws me the ...
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48 views

Visualizing netCDF file with unknown projection

I'm having a tough time visualizing a netCDF file with poor metadata in ArcMap, which is probably not a surprise. I know the file to contain ozone concentrations over the United States. If I try to ...
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1answer
48 views

Using Panoply command line scripts

I have been using Panoply for a while now, and I noticed that you can export a command line script to reproduce the figure. If I look at the first lines of the script, it tells me that I should run it ...
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Plotting a NetCDF with only 1 grid cell using Panoply

I have a .nc file with only 1 grid cell (1 latitude and 1 longitude). Whenever I try to plot it in panoply, of course, all the variable appear to be 1D. Is there a way to plot the point together with ...
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23 views

How to convert raster in UTM to lat/lon using GDAL (or other tool)

I have a .tiff file given with UTM coordinates that I'd like to convert to a .nc (NetCDF) file with latitude/longitude coordinates. I've tried with gdal_translate and gdal_warp but these did not work. ...
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1answer
183 views

How to extract,stack and calculate Standard Deviation from a NetCDF (.nc) to produce a single standard deviation and Mean image in arcGIS?

I have a NetCDF file for several years of monthly Climate data ( Precipitation,PET,Temp,etc) data from CRU 3.22 (Climate Research Unit). I want to extract a subset of the dataset namely 2000-2010. And ...
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23 views

Extract many bands out of a .tif

I have downloaded a netcdf file from NOAA's website, with monthly means over many years. I have opened it in ArcGis with "Make netcdf raster layer" and have converted it into a .tif file following the ...
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1answer
18 views

How to deal with two dimensional lat and lon variables in a NetCDF file in R?

I'm trying to convert a NetCDF file to a dataframe in R using the RNetCDF package. The NetCDF file is very different from what I have experience with, in that the lat and lon values each have two ...
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1answer
691 views

Extract data from netcdf using a shapefile polygon in python

I need to subset data from a NetCDF using a specific shapefile. The data are sea surface temperature and ocean color at 1/4 degree resolution. I have 4 polygons describing the US. Northeast ...
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1answer
14 views

Does NetCDF4excel provide packed or unpacked values?

I'm using the NetCDF4excel tool to work on files from the ERA Interim database. I'm wondering whether I should adjust the values of the variables produced by the tool using each variable's ...
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1answer
39 views

How to read in a NetCDF file in IDL and save out to a GTIFF, single routine?

Does anyone have a simple script to read in and then save out a NetCDF file to a tiff file? The files I have lat / long / and a precipitation variable, that's it. I'd like to convert a list of them in ...
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1answer
127 views

Open a NetCDF file with multiple time step on QGIS (using Python console)

How to load a NetCDF-file into QGIS using Python? explains well how to load a NetCDF with PyQgis. However, it did not help me to choose among all the available time steps. Is there a way to import a ...
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2answers
3k views

How to load a NetCDF-file into QGIS using Python?

I have a CF-conform NetCDF-file which can be loaded into Quantum GIS (Version 1.8) by using the "Add Raster Layer"-button and subsequently choosing the file and the raster layers of interest. This ...
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1answer
104 views

Programs/ languages to process netcdf files “fast”

I am using R to loop through thousands of NetCDF files (downscaled climate data), and while I am able to do it using R, the code is too slow. I am looking for a way to speed it up and to maintain ...
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25 views

Extracting weather data at multiple locations from NetCDF with python

I am trying to extract weather data from a NetCDF file at multiple locations using python. The file (AROME_MetCoOp_00_DEF.nc_20160128) is from met.no here File information: <type ...
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31 views

Offset and scale of netCDF rasters using Python and ArcGIS

I'm using the arcpy.MakeNetCDFRasterLayer_md command in Python to convert a netCDF archive into multiple rasters, one for each date. Below is a minimum working example of my code, that I've written ...
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2answers
543 views

problem to open a netCDF and create a raster file

I want to open a netCDF file and create a raster with ArcMap 10.2. The file contains the mean monthly temperature for Switzerland. I found it in meteoswiss web site. I tried to open it with the ...
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2answers
4k views

Batch conversion of netCDF to Raster in ArcGIS using Python

I'm having trouble using the Dimension Values (Optional) argument in arcpy.MakeNetCDFRasterLayer_md. Whatever I seem to do the output raster is always the first layer which is the default value. ...
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0answers
24 views

Resampling netcdf file?

What is the best way to change the cell size of a netcdf file, keeping it as netcdf? I have looked into ArcGIS and GDAL and have not found anything yet. I prefer to use python if a solution is ...
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1answer
150 views

Geoserver netCDF output missing classes

I downloaded the latest stable release (2.7.1.1) from http://sourceforge.net/projects/geoserver/files/GeoServer/. It starts with the integrated jetty and works fine so far. So I wanted to configure ...
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10 views

Creating NetCDF file from Rasters using ArcGIS for Desktop?

I have a series of one-band rasters (365 .tif files) and want to store these in a NetCDF format file, ideally using ArcGIS Multidimension tools. I’m interested in knowing a workflow for this is, as ...
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24 views

Changing/ updating dimension values of ncdf file in r

I posted this question to SO but in hindsight, gis.se is a much more suitable place: I have several ncdf files that do not have the correct spatial dimension values so I want to update these values. ...
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3answers
55 views

Statistical Analysis of Climate Data

I am doing a study on how a changing climate is influencing the spread of an invasive species of moth. I have climate data in the netCDF format which I have made into both rasters and point ...
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1answer
151 views

transpose large netCDF with GDAL, NCL, NCO or CDO

I have a large netCDF file (444GB) that I would like to transpose. The file is flipped with latitude on the x-axis and lon on the y-axis. See pictures of one band below. Not correct Correct: I ...
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73 views

Which statistical methods to compare the spatial distribution of two different variables in two raster maps?

I am working with two global raster maps using the R Software (original file: netCDF for map 1 and GeoTIFF for map 2), with a resolution of 5 min of arc. Map 1 contains data on the share of the land ...
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2answers
503 views

problem reading netcdf

I am using qgis 2.2 (I have also tried this in qgis 2.0 and arcgis 10 with the same result) (I have some basic understanding of netcdf, but I am probably missing a lot of details...) I have manged to ...
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27 views

S57 Ecdis extract data

I have multiple S57 Ecdis files and would like to extract some data out of them. In specific some 'depth' data which is bound to lat/lon coordinates. I will need to bulk process all the data and group ...
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2answers
60 views

Reading *.cdf files in ArcMap?

I received some geospatial data (on rainfall) in a "cdf" format. I have worked with "nc" files and uses the 'Make NetCDF Raster Layer' tool in ArcMap to read NetCDF files. However, I wasn't able ...
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304 views

How to avoid “Unable to compute a transformation between pixel/line”?

I am trying to re-project from Equi-rectangular to the NASA global EASE grid (Equal Area Scalable Earth) grid 1383 586 with a ~25 km cylindrical projection (ESPG=3410). The file is provided as HDF5. ...
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1answer
52 views

How to change time zone for netcdf file

For example, I have a netcdf file from WRF model, and its time zone is in UTM 00. I want to change the time zone to UTM 08, how to achieve that?
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1answer
61 views

GRIB to NetCDF with GDAL, specifying dimensions

I have a GRIB dataset representing temperature over North America, in Lambert Conformal Conic (with specified central meridian, latitude of origin, etc.). It has what should be understood as a ...
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1answer
156 views

Converting GRIB to NetCDF with time dimension using netcdfAll?

I'm trying to convert grib files to NetCDF. The grib files contains subdata sets which are time related. Using the netcdfAll Java library with the NetCDF-4 C library works fine. java -Xmx1g ...
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1answer
83 views

Project NetCDF file using GDAL or QGis

Can I project a NetCDF file with the help of GDAL or QGis? The file info is: gdalinfo c:\tomcat-6.0.36\webapps\ncWMS\layers\RAIN_MM_1hour_ac.nc Driver: netCDF/Network Common Data Format Files: ...
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1answer
62 views

Plotting netCDF4 data with the right projection

I guess this will sound simple to you but I just cannot get the right plot within R. I have a netcdf4 file and would like to visualize it within R just like I would do in QGIS and ArcGIS. sample data ...
2
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1answer
36 views

Encode an azimuthal equidistant projection in NetCDF conversion

I'm trying to do Azimuthal Equidistant in CF-compliant NetCDF, but I didn't get the correct projection. If you compare the first two information (gdalinfo) you see there is no AUTHORITY and also ...
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1answer
125 views

Getting netCDF data into PostGIS database using Python?

I can read the netCDF file data with netCDF-python or with gdalinfo, but I am unsure of the easiest way to get it into a PostGIS database. It would be really easy if I could convert the netCDF file ...
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51 views

Installing netCDF plugin for Geoserver

I want to install the netCDF plugin for Geoserver, in order to publish radar data in netCDF format. I'm following the instructions listed at Geosolutions IT Training. I have to add ...
2
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1answer
60 views

Is it possible to append data to existing NetCDF file using ArcGIS or ArcPy?

There is a Raster to NetCDF tool for converting raster to NetCDF using ArcGIS. I need to append raster data as dimension to NetCDF? How to do that using ArcGIS or ArcPy?
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53 views

Create ImageMosaic of NetCDF in Geoserver2.8 throw error?

I create a ImageMosaic of NetCDF and usage of PostGIS to store the mosaic indexes. It's throw error when I request by WMS. I'm use Geoserver2.8. But it's ok when I use it in Geoserver2.7. Why?? ...
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61 views

Resampling netcdf file

I have several years of precipitation data from CHIRPS that has a resolution of 0.05 degree. I'm currently working on a recharge script that has static data resolution of 0.01 degree. I'm trying to ...
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0answers
75 views

Write stacks of GeoTIFF image to NetCDF by chunk size

I converted GeoTIFF image stacks to NetCDF file with writing data by Index order (layer by layer) (this was a main solution). The problem is, it writes slowly (for 25 images - 1Gb takes 90 seconds). ...
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0answers
65 views

Extracting Multivalues to Points from NETCDF4 Raster using ArcPy seems imprecise?

I'm getting some strange results in a multivalues to points extraction from a NETCDF4 layer from the MERRA reanalysis product. In particular, it seems like the values being assigned are way off in ...
2
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1answer
41 views

Geoserver NETCDF file store updates

I am looking for a general approach to "refreshing" a NETCDF store using the REST API. I have a NETCDF file that is generated every 24 hours. I need to update the file, but would prefer not having ...
3
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2answers
116 views

Reading Lambert Conformal Conic NetCDF into GeoServer?

I'm working on reading in a NetCDF file into GeoServer and GeoServer has no problem reading it in as a data store, but when I go to publish the layer from the data store I get an error that states ...
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1answer
49 views

How to generate a WMS from ncWMS and put it in the OpenLayers?

I am a beginner to make a web application. I am using ncWMS to serve the netCDF data. And I put some data in the server, I got a interface like this: This basically satisfies the function that I ...
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38 views

Using the “Extract to point tool in ArcGIS”?

I have downloaded some netCDF data from Tamsat and have successfully imported it into ArcGIS. However, I am getting no values when I used both the "Extract multi values to point" and the "Extract ...
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36 views

CF convention and GDAL projection

I'm trying to create some NETCDF4 CF compliant files from some code that generates GDAL compatible files. I was wondering whether there is a simple translation from GDAL (or proj4) projection ...
3
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1answer
41 views

Assigning spatial info for NetCDF files using ArcGIS for Desktop?

I have quite a few NetCDF files that arrive from a air quality model without any spatial reference. However, I do have the spatial reference information that is required. Within Arc I use "make a ...
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40 views

netCDF import problem in QGIS (XY issue)

I working with a netCDF file related to precipitation over time in QGIS. When I import the file, QGIS reads the data indicating y-coordinate, instead of timestep, as the dynamic dimension to associate ...