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Question for MOD35 cloud mask

I have a question about processing MOD35 cloud mask image. I worked reprojection on MOD35 cloud mask image using MODIS Swath Tool. The processed results of MOD35 cloud mask are consist of 6 band ...
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ARCGIS Polygone manipulation : Splitting if area>=5KM or merge if area<=0.5KM

I'm just facing a wall. I don't know if even possible to complete the process with modeling. I may need to work with python script which I'm not used to it. In this state, I got a buffer created from ...