Statistical computing language and software environment.

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9
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1answer
663 views

Kriging on GRASS+R - cannot allocate vector of size 146.5 Mb

I'm trying to do a groundwater elevation map with an Ordinary Kriging on R, but always resulting on the lack of memory cannot allocate vector of size 146.5 Mb allocation (windows xp 32bit). ...
5
votes
2answers
851 views

What is the cause of 'tearing' of polygons (artifacts) using R, ggplot and geom_polygon?

Thanks to the answer given in this question I have been able to subset and draw a map of electoral divisions in part of the UK, in this case Pembrokeshire. The resulting data frame is large and ...
5
votes
3answers
2k views

How can I find out how to convert this point to lat lon?

I have received a shapefile with measurement points to be analyzed, but no matter how I try, I can't find how to convert to lat lon. I suppose it would be good to know the projection but when I look ...
3
votes
2answers
243 views

Display two-dimensional color gradient for two different quantities

I have two overlapping raster layers. One contains quantity A from 0 to 100, and the other contains quantity B from 0 to 100. I'd like to create a map displaying both sets of data at once based on a ...
3
votes
3answers
2k views

Setting “R Folder” Path in QGIS Sextante

I have installed R via the R-Project website. I have QGIS installed via OSGEO4W (currently 1.9.0 Master), and have Sextante plugin installed and working with GRASS and SAGA providers. I am now trying ...
1
vote
0answers
124 views

Performing Moran Test using R? [closed]

I’m very new to R so please Bear with me: I have a set of data containing AREA Infested for each region ! and I want to know if there are any spatial autocorrelation between the regions! Here a sample ...
0
votes
1answer
53 views

How to rasterize a vector dataset in R?

I would like to compare vector vs raster data. So i try to fix a problem using both ways. I made it in vector first : coastline<-readShapeSpatial("shp") wets<-readShapeSpatial("shp") ...
0
votes
2answers
232 views

How can I fix a geoTiff with an incorrect CRS?

Trying to load and plot a raster (it's a DEM) in R, but having problems. Using R I read in a raster file: library(raster) dem <- raster("DEM_Victoria.tif") # >70 MB print(dem) class ...
31
votes
7answers
12k views

Tutorials to handle spatial data in R?

Does anyone know some good tutorials to handle spatial data in R? I know that there are some packages like rgdal and maptools but I haven't actually found usefull tutorials to get in touch with the ...
14
votes
3answers
649 views

How to determine if trees within forest gaps are clustered?

The attached dataset shows approximately 6000 saplings in approximately 50 variable sized forest gaps. I am interested in learning how these saplings are growing within their respective gaps (i.e. ...
14
votes
3answers
686 views

Ecological geospatial conundrum

I am looking for a different, more elegant solution to a spatial statistics problem. Raw data consists of an x-y coordinate for each individual tree (i.e. converted to a point .shp file). Although ...
16
votes
5answers
9k views

How to cluster spatial data in R?

I am very new to R, so please bear with me : > I have bunch of data points with latitude and longitude. I want to use R to cluster them based on their distance. I have already taken a look at this ...
11
votes
1answer
6k views

Raster legend in R: how to colour specific values?

I have an elevation model plotted in R r <- raster("example.dem") plot(r, col = topo.colors(20)) Some of the values are below sea level (0), and I'd like to have those display in red. How can ...
8
votes
1answer
2k views

How can I use fortify() to create a filtered R data frame from a shape file?

I am in the process of building a ggplot choropleth map of population in administrative areas in Wales. I have downloaded the Boundary-Line data from the Ordnance Survey and extracted what seems to be ...
7
votes
1answer
2k views

use proj4 to specify Robinson projection with R ggmap and ggplot2 packages?

I want to project this map in robinson projection: library(ggmap) world <- map_data("world") ggplot() + geom_path(data = world, aes(long, lat, group = group)) ...
6
votes
3answers
3k views

How to efficiently read and reclassify many rasters in R

I've been tasked to create a suitability analysis of wave conditions in the Gulf of Mexico. I have 2 thousand or so raster files that are about 8 MB each (2438 columns, 1749 rows, 1km cell size). ...
15
votes
2answers
5k views

How to efficiently read a kml file into R

Hi I'm working with huge .kml files (up to 10 Gb) and need an efficient way to read them into R. Until now I've been converting them to shapefiles via QGIS and then back into R with readShapePoly and ...
10
votes
4answers
1k views

Problems with NA values when reading .DEM file with R 'raster' package in Windows

I am trying to read a raster file in a .DEM format on windows using the 'raster' package in R. I get problems with NA values, when loading the data into R in Windows 7, but I do not have the problem ...
8
votes
1answer
18k views

find the centroid of a cluster of points

While searching the web, solutions for finding centroids of polygons come up rather often. What I'm interested in is finding a centroid of a cluster of points. A weighted mean of sorts. I would ...
6
votes
2answers
316 views

How to make a bivariate colour ramp with QGIS, R or similar?

Many recent maps I have seen have these neat two-way color gradients that can be used to color correlations between continuous estimates. Here is an example taken from a recent publication (Source: ...
4
votes
1answer
854 views

How do I implement 'weighted' kriging in R?

I'm trying to interpolate the values of an attribute (called "disease_rate") that i've sampled at a set of spatial points and i'd like to add 'weights' to the resulting kriging estimates. Basically, ...
10
votes
2answers
285 views

Count raster value in a bounding box (spatial extent)

I have simple question: given a bounding box, how can I count the number of specific values (say, I am interested in the number of value == 1 ) in a raster in 1) arcpy, or 2) raster package in R?
9
votes
1answer
291 views

How to find the most spread out locations?

Probably a very simple question. I have a list of about a thousand potential geographical locations (lat lon), and of those I need to select the 200 locations that are "most spread out". I think that ...
8
votes
3answers
383 views

R, rasterVis and RGL: how to prevent reflective surfaces?

I have been experimenting with digital terrain model files in ESRI ASCII grid raster format. Despite zero experience with this type of data I found it very easy to load into R, as per code below. The ...
8
votes
1answer
6k views

R : convert a spatial polygon objet to spatial polygon data frame

My goal is to modify an existing shapefile by merging certain polygons. After importing the shapefile and using the UnionSpatialPolygons command, I get the polygon outline that I want. However, this ...
4
votes
1answer
422 views

Moving window regression (MWR) in R

I'm looking for some package in R to estimate the value of a variable by moving window regression. I have read in Local Models for Spatial Analysis, which is a good method to predict values ​​at ...
3
votes
2answers
4k views

Choosing the correct value for proj4string for shape file reading in R “MapTools”

I am having a shape file of polygons and another CSV file which contains a list of points as (Lat, Lng) pairs.. I want to check for each (lat, lng) pair from the CSV file which polygon does it fall ...
11
votes
5answers
6k views

How best to fix a non-noded intersection problem in PostGIS?

I'm using a PL/R function and PostGIS to generate voronoi polygons around a set of points. The function that I am using is defined here. When I use this function on a particular dataset I get the ...
10
votes
2answers
3k views

Aggregating points to grid using R

I have a question with regard to spatial aggregation in R. What I am trying to do is aggregate a point dataset to a grid. I am unsure however how to do this as I have little experience with this sort ...
9
votes
3answers
3k views

R: Download a large DEM, change projection, and adjust to smaller scale

This is a process that takes just a few seconds in GIS software. My attempt to do it in R uses a large amount of memory then fails. Is there something wrong in my code, or is this just something R ...
7
votes
2answers
1k views

Is it possible to run an R script on a layer in QGIS?

I'd like to run an R script on a layer loaded in QGIS (to rotate a set of points created there using the Vector:Research Tools:Regular Points tool). I thought ManageR might work but cannot get it ...
6
votes
5answers
5k views

how to overlay a polygon over SpatialPointsDataFrame and preserving the SPDF data?

I have a SpatialPointsDataFrame with some additional data. I would like to extract those points inside a polygon and at the same time, preserve SPDF object and its corresponding data. So far I've ...
6
votes
5answers
2k views

Create a ground overlay kml from georeferenced raster

I have a world georeferenced raster (5m resolution, ~4000 x 4000 pixels) that I would like to display in google earth. I am looking for a simple and effective way to generate this kml file. Using ...
4
votes
1answer
753 views

How do I create a heatmap in ggplot?

I'm using R with ggplot2 to generate maps from shapefiles and from data in SQL Server. I'm trying to get to a stage where I can automate a large chunk of the mapping I do. So far this is working well ...
1
vote
4answers
381 views

Detection of geographical trend of a variable

What is the best method to detect and graphically display the spatial trend of a variable? I'm looking for something that tells me the probability that the trend is from "north-west to south-east" or ...
-3
votes
3answers
2k views

How to add a field to a shapefile using R

This question is trying to make sense of a post that already exists that looks good, but is failing in practice. The second ranked answer uses the foreign package to read a shapefile attribute table ...
9
votes
4answers
8k views

How can I export raster data from Arcmap to an R *.grd file format?

I want to work with raster data in R, but I have problems exporting my raster dataset from ArcMap. By "export data"/GRID I get a file with an *.aux extension. What I need is *.grd. Can anybody help ...
8
votes
3answers
726 views

Identification of consecutive points within a specified buffer

I have a point file, hourly relocations of an animal, and I want to be able to place a buffer around each point and calculate the number of subsequent points which are within the buffer zone. I am ...
7
votes
2answers
2k views

Convert several SpatialPointsDataFrames to raster

There are 100 SpatialPointsDataFrames in my Workspace. I loaded them on this way: filenames <- list.files(path="", pattern="XYhectareTravelTimes_ez+.*shp") for(i in ...
7
votes
5answers
4k views

Calculate distance in km to nearest points (given in lat/long) using ArcGIS DEsktop and/or R?

I have two point datasets in ArcGIS, both of which are given in WGS84 lat/lon co-ordinates and the points are spread across the whole world. I would like to find the nearest point in Dataset A to each ...
6
votes
3answers
314 views

How to measure similarity of SpatialLines objects

I created two SpatialLines objects in R: . These objects were created this way: library(sp) xy <- cbind(x,y) xy.sp = sp::SpatialPoints(xy) spl1 <- sp::SpatialLines(list(Lines(Line(xy.sp), ...
6
votes
1answer
324 views

How to 'reverse clip' (erase) in R

A reverse clip saves only the part of your spatial object that is outside the bounds of another object, as opposed to a regular clip which saves the parts that are inside the other object. Here's how ...
4
votes
1answer
869 views

Self organizing maps and spatially Constrained Clustering in R

There are a few algorithms to perform spatial clustering in R but most of them focus on point pattern analysis (for example here). I would like to perform spatial constrained clustering for polygon ...
4
votes
1answer
4k views

How to plot points on maps using ggplot2 and R?

Thanks for help me in GIS 101 Problem #1, now I have geocoded a few hospital in Connecticut using google map, I have able to visualize them in QGIS, now I am trying to do it in R. ct <- ...
3
votes
1answer
293 views

problem with polygon smoothing in R

With R I am looking to smooth my Polygon: inter2.csv code: inter1 <- read.table("c:/inter2.csv", header=TRUE) # add a category (required for later rasterizing/polygonizing) inter1 <- ...
3
votes
1answer
439 views

Count overlapping polygons in single shape file with R

I have a shapefile of species ranges for ~ 346 species. Some species have multiple polygon ranges so there are 1,078 polygons and many polygons are multi-part. It looks something like this: I ...
3
votes
1answer
138 views

Are there examples of high-level interfaces to NetCDF

The R raster package and GDAL both have independent wrappers around NetCDF-4* that treat an array variable as a "complete" dataset, i.e. they provide objects or interfaces that seamlessly give access ...
3
votes
2answers
207 views

Spatial Classification

I am not sure what to call my problem. From this image, I have a set of classified polygons (colored). I would like a way to classify the white polygons in the image. I don’t have any attributes to ...
3
votes
1answer
540 views

How to speed up band math in R 'raster' package?

I have some GeoTiff rasters with over 100 bands in total, but they are not huge: resolution is about 1200x600 and total size is less than 7 mb. I'm trying to do a simple NDVI calculation: raster ...
3
votes
2answers
3k views

Converting NZMG (or NZTM) to latitude / longitude for use with R map library

I am a statistician with no background in GIS so apologies for the newbie question. We routinely use R for a range of statistical and graphic analysis and are interested in using its map library to ...