Statistical computing language and software environment.

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0answers
17 views

Change raster projection in R

I'm trying to change raster projection using R and its raster library. The input raster projection is Lambert Azimuthal; this one and other params can be seen here: ...
1
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2answers
48 views

Rasterizing polygons with the function “gdal_rasterize” in R

I'm using the function gdal_rasterize in R (package gdalUtils) to convert a polygon shapefile into a raster. Here is my code: r.test <- gdal_rasterize(src_datasource="df.shp", ...
2
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0answers
7 views

In QGIS 2.12 processing R scripts fails (plots remain blank) due to a wrong variable name - Is there a workaround?

I am trying to execute r scripts in 2.12. All of them fail. Plots remain blank. It seems that the variable "Layer[[Field]]" returns NULL: E.g: hist(Layer[[Field]],main=paste("Histogram ...
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1answer
34 views

R: count raster values using another raster as mask

I would like to count the frequency of values in one raster, using another raster (different resolution) as the zonal condition. The premise is that the coarser resolution raster represents the area ...
3
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1answer
17 views

Plotting netCDF4 data with the right projection

I guess this will sound simple to you but I just cannot get the right plot within R. I have a netcdf4 file and would like to visualize it within R just like I would do in QGIS and ArcGIS. sample data ...
7
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4answers
910 views

Assigning RGB values from Geotiff image to LiDAR data, using R

I have given a Geotiff image and its corresponding Lidar data (x,y,z) in UTM coordinates. I need to merge the Lidar data with the RGB values from the image. That means, at the end, I need to plot ...
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0answers
16 views

Export image from PL/R on postgres

I'm trying to export an TIFF image from a PL/R Function in my PostgreSQL database. The output of the image appear be corrupted, because when I'll open the image, is showing the message: "Loading ...
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0answers
17 views

Reclassification of CORINE map using R

I am trying to reclassify the CORINE map for Hungary to 4 classes in R. but after reclassification, when I import the asc file to QGIS it loads it empty. Am I doing something wrong? ...
21
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4answers
7k views

How to efficiently read a kml file into R

I'm working with huge .kml files (up to 10 Gb) and need an efficient way to read them into R. Until now I've been converting them to shapefiles via QGIS and then back into R with readShapePoly and ...
1
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0answers
34 views

Clear QGIS plot results window

How do you clear old plots from the plots result window in QGIS? Is there a line of R code that you'd need to run to do so, or is there a means of doing so through the GUI?
1
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1answer
16 views

Inverse Distance Weighted (IDW) Interpolation with Radial Basis Function (RBF) in R

I want to perform an IDW interpolation with R. I am aware that I can do that with gstat::idw. But I want to change the parameter 'idp' with a radial basis function (RBF): where is the ...
0
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0answers
30 views

Plotting Raster in R gives error

I know this is not much to go off of, but I can't seem to find the answer anywhere. I was plotting this raster image on Friday and it worked, and now when I try to plot it, I get this error. The image ...
2
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1answer
50 views

Building predictive maps of response variables in R

I am a novice in spatial statistics in R. So, I am looking for some advises. In particular, I would like to create a predictive map of capture success from a generalized linear mixed-effects model ...
0
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2answers
46 views

Failure of the code calling the function “rasterize” in R: NAs or no slots

I have some problems to convert a shapefile into a raster. I used the function rasterize (package raster) but all raster values are equal to NA. Following the answers to this question rasterize ...
0
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1answer
22 views

Tearing of SpatialLinesDataFrame and problem with gClip function

I am trying to use ggmap with geom_map and geom_path commands to add a SpatialPolygonsDataFrame of African countries and a SpatialLinesDataFrame over a raster. When I use the defined function gClip() ...
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1answer
168 views

using raster.predict for Cubist model, factor levels list

I would like to thank in advance any help or advice. Let me know if I need to provide more reproducible data/code. I am working on a Cubist prediction model for soil texture, using continuous and ...
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1answer
50 views

Creating spatial population heat map

I have some data that contains crab males population based on latitude and longitude. I am trying to plot the population distribution on map (not point density). For example I like to show which areas ...
5
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1answer
110 views

R fortify causing polygons to tear

I'm am having some trouble plotting my spatial data using ggplot2. The map looks fine when plotted using spplot, so I'm assuming that the tearing occurs at the fortify stage. The code is as follows: ...
4
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1answer
61 views

Predict/estimate point values for unsurveyed areas based on vegetation type

I have point data from deer surveys and would like to predict values for areas not surveyed based on vegetation type (Grass, Disturbed, Oak, Pine, Mixed etc.) So far I have dissolved my vegetation ...
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0answers
21 views

Spatial index in R - Performance enhancement on geospatial processing [closed]

In my Geoinformatics studies, I often stumbled over the usage of spatial indices in spatial databases like here. However, I wondered if there is any possibility to use such indices in R in order to ...
42
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9answers
15k views

Tutorials to handle spatial data in R?

Does anyone know some good tutorials to handle spatial data in R? I know that there are some packages like rgdal and maptools but I haven't actually found usefull tutorials to get in touch with the ...
0
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0answers
10 views

paste based in the number of elements in the row [migrated]

This is my dataframe s <- data.frame( x = c("a","b","c"), y = c("d","e", NA), z = c(NA,"j",NA) ) And I want to concatenate(paste) the values based a condition, I want to paste with comma ...
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1answer
38 views

Increase speed of reverse clip (erase) for large shapefiles in R

I would like to do a reverse clip (or erase in ArcMap) from shapefiles (polygons) then to merge the two shapefiles into a single shapefile. From this post How to 'reverse clip' (erase) in R, ...
3
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1answer
547 views

Spatial Interpolation Methods like PRISM

I am looking for some kind of software (free software) that allows me to make an interpolation like PRISM software. The interpolation used in PRISM is a local regression and accounts for ...
1
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1answer
26 views

Correct Projection for calculating centroids of a group of points?

I have a long list of points covering all of North America for which I would like to calculate the centroid (by grouping points based on the "Name" column). My approach is to take the WGS84 ...
0
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0answers
51 views

R raster() function failed to read tif file

I wrote a few lines to load data in TIFF to R. The function I used was: library(raster) test <- raster("file name.tif",package="raster") and it worked perfectly last week. However, now I am ...
-1
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0answers
27 views

create a grid and extract species and climate data [closed]

I am looking for R support to arrange my dataset which I tried and failed in Arc GIS. If you have an idea please let me know. I have 6 bioclimatic variables and 14 species. I want to create a ...
1
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1answer
38 views

Spearman correlation between two rasters in R

I have two rasters of the same area. The only difference is that they were created using two different methods. I would like to compare them and see how correlated they are pixel by pixel. Any ideas ...
1
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1answer
21 views

How to manually assign new names to attributes in a spatial data frame column with NA values

Data can be found here (Admin 1- States and Provinces, first download button): http://www.naturalearthdata.com/downloads/10m-cultural-vectors/ I have a shapefile of the world that I'll be pulling ...
6
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4answers
268 views

Estimating river Channel Width using Python/ArcGIS/MATLAB/R?

I am trying to estimate the river channel width from digitized polygon or poly-lines shapefiles. To do so, I converted poly-line shape files to points.shp at regular intervals (at 1 cm). Later, I ...
2
votes
1answer
50 views

Tearing of polygons using ggmap and readOGR

I'm trying to incorporate a shape file of US states with ggmap and keep getting "tearing" of my polygons. I tried changing group=id to group=group which helped, but didn't seem to resolve the ...
2
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1answer
30 views

problem when doing algebra with raster layers in R

I'm trying to combine bioclim raster layers to create the following layer. (Q) = AnnPrec/[(Tmax+Tmin)*(Tmax-Tmin)]*1000 For that, I import a bioclim stack: envirc = ...
2
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0answers
17 views

Adding a custom color scale for a sp.points layer to levelplot() legend

I'm wondering how I can add a customized color palette that I used to display a sp.points layer in a call to levelplot (lattice plotting) in the rasterVis package in R. I used a function that Dave X ...
1
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0answers
39 views

Spplot SpatialPolygonDataFrame and SpatialGridDataFrame

I have to plot in the same graph something like this: Then, I have elements from SpatialPolygonDataFrame class and others elements from SpatialGridDataFrame class. When I try to plot them in the ...
2
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0answers
29 views

R: Setting pop-ups dependent on zoom level using leaflet

I have data that I would like to group differently, depending on the zoom scale in an interactive map made using leaflet. I have expenditure data and I would like to show expenditure by lake at ...
9
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0answers
150 views

Identifying overlapping time intervals with two more criteria in R?

I have to check birds observations made over a longer period for duplicate/overlapping entries. Observers from different points (A,B,C) made observations and marked them on paper maps. Those lines ...
3
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1answer
78 views

Error while comparing two raster layer in R

I have got a geographic point distribution with N prehistoric settlements with a size of x and want to compare the distribution with an economic simulation, which produces M settlements (Usally N > ...
0
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1answer
32 views

How to create a continuous scale with distinct/custom color and value breaks with ggplot2 map

As stated in the title, I'm trying to create a continuous scale with distinct color and value breaks within the ggplot2 package in R. I'm using some dummy code to illustrate my problem: ...
9
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2answers
367 views

Create area buffers that are limited by a coastline

I'm trying to use ArcGIS 10.2 to create a buffer of points based on a pre-defined area (e.g 400 sq km). Further to that, the buffers of some of the points are close to the coastline that requires the ...
2
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2answers
42 views

Use function spplot

Does anybody know how to plot with "spplot" fuction two elements of diferents classes?. One element from "SpatialPolygonDataFrame" class and other from "raster" class.
1
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0answers
31 views

How to do a Kernel Density map from weighted point observations using a Cauchy kernel?

I need to produce a kernel density map, but instead of using a common kernel function such as Gaussian, I need to use the Cauchy kernel function. I have tried the Kernel Density tool in ArcGIS and ...
1
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0answers
33 views

how to extract line features from a raster

I have a raster of land cover types where roads are represented by pixels (1 pixel = 25m x 25m = 625 m²). Is there a way to extract line features (here roads) from a raster ? ## Create raster as an ...
0
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0answers
29 views

Trying to run an ANOVA for fields in a dataframe [R] [migrated]

So far my code looks like this: Points = readOGR(dsn = "./Data/filename.shp",layer = "layername",stringsAsFactors = FALSE) Points$LDI = extract(LDI, Points) LDI = ...
0
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1answer
27 views

R: raster stack (time series) loop pixelwise and write layer number of value occurence into a single output layer

I have a raster stack of gridded RFE 2.0 rainfall data (time series of one year = 365 layers). Now I wanted to identifiy on which date during the year the first rainfall occurs for each Pixel. The ...
1
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1answer
31 views

Error when trying to plot legend for geom_point with ggplot2

Here's some mock code to go along with my problem: #read in libraries library(ggmap) library(sp) library(raster) library(ggplot2) #read in country shapefile, project, fortify for mapping with ...
1
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1answer
306 views

How to extract percentage of land cover from a raster according to multiple shapefiles?

I have a raster map that represents land cover of a region, and different shapefiles (total 120) in the same region. I want to know the percentage of every land cover for each shapefile. For example, ...
0
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3answers
35 views

How to add two dataframe columns of city and state names to form single city-state column for geocoding in R? [closed]

I tried to search for an answer to this, but I couldn't seem to find the right search terms, so I decided to spell it out quite explicitly. I have a data frame with separate columns for cities, ...
0
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2answers
70 views

How can I convert a large csv of irregular lat/lons to regular raster GRID?

I have a large csv containing ~5 million rows containing Lat, Lon, and Depth bathymetry values. I want to generate a raster GRID (for use in Arc) from this, but the trouble is the lat/lons are ...
9
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1answer
1k views

Fixing orphaned holes in R

I'm trying to perform a union on a common field after merging two adjacent shapefiles. The shapefiles end up with at least one thin sliver of space between them. When I attempt a union I get the ...
3
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3answers
1k views

Relationship between sp package in R; MapWindow; ArcGIS/QGIS?

I am using ArcGIS at office for some visualization work, but I feel it kinda dump to performing the same tasks several times for visualizing some data on different maps. I am think of automating it ...