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Try using the same tool but from the Processing Toolbox: Processing Toolbox > QGIS geoalgorithms > Vector analysis tools > Distance matrix This version includes distances at 0 m. The first image shows the results of the Distance matrix tool from the Processing Toolbox: This second image shows the results of the Distance matrix tool from the toolbar ...


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I found the answer to the original question, and will therefore answer it here, and make a new question. Turns out that the points that are omitted are the ones that match exactly , or that has 0 metres between them. New question will be about how I can make a distance matrix with both the nearest points with distance >1 m and the ones that match ...


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EDIT: there is actually a simpler answer. Compute the intersection between your two layers (Vector > Geoprocessing tools > Intersect), then use the Group Stats plugin to compute statistics on the constituencies. You can even compute the total area of Natura 2000 sites per constituency. Minor issue: it will only take into account Natura 2000 sites that ...



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