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I would suggest you create a series of models using iterators. You can create a model for each type and nest the models as sub models in order to include all of them into a single model. You would have to do this because a model can have only one iterator. So each model will iterate through the data object then deltete. Use preconditions to control the flow. ...
Copy Features handles the conversion of file formats (shp into sde-fc like in your example) simply by what workspace has been defined in the output path.
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