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Finally figured this one out. And apologies to @Vince - I see you mentioned this in a comment but I completely missed it until right now when I came to post this answer. The tool arcpy.ArcSDESQLExecute() is the arcpy equivalent of pyodbc, but unlike pyodbc, ArcSDESQLExecute will in fact read a .sde connection file (so I don't need to pass login details ...



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