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Thanks to everyone for all of the help! I was able to create an equation in the Raster Calculator (using the Con expression) that stacks my layers and keeps only the visible pixel values. Here is the two-part method that I used: Ran first calculation to stack middle layer (R2) on top of bottom layer (R3) Con("R2" == 2,"R2","R3") Ran second ...


You could try mosaicing: Add every of your rasters to mosaic (top layers should be first). Set Mosaic Operator to First. Set Nodata value. Save mosaic as tif file. UPDATE: If you have changed your raster's symbology type to "classified" and want to overlay this images, then you can use Reclassify tool before mosaicing.

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