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For the past two months since I asked this question, I haven't been able to reproduce the problem. I have come to the conclusion that the star markers indicated photocenters that contain generated tie points, and even when those tie points are deleted the attribution remains.


Let me give you some suggestions: For SFM workflow you can use VisualSFM (http://ccwu.me/vsfm/). It is free for non-commercial use. Here you can also transform coordinates using GCP or GPS data in EXIF file of images/input gps file. The output of PMVS can be stored and opened in Meshlab. From there you can export .ply file (I guess should not be saved as ...

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