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The real cause of the issue is the max-file-size limit in WEB-INF/web.xml. It is set for 50MB while the geoserver.war (version 2.9.0) is over 65MB. Open the file below for tomcat7: sudo nano /usr/share/tomcat7-admin/manager/WEB-INF/web.xml Locate multipart-config tag and turn 50MB to 500MB.

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