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Sorry for the short answer but I suppose that simply adding an alpha channel might do the trick. At least I could make an output that is semi-transparent in QGIS with the following command. gdal_rasterize -of gtiff -ot byte -co alpha=yes -burn 255 -burn 0 -burn 0 -burn 100 -ts 500 500 -l test test.shp test.tif

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