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Sep 18, 2015 at 8:06 comment added radouxju You mentioned that the output had the size of the smallest raster, so this at least should solve part of your problem. For the second problem, I usually try to avoid very long "con" string because its difficult to pick up errors. In your case, the workaround could be to reclassify zero/ones rasters using "IsNull()" ," > 75" and " < 25 " , then you sum the three sets of rasters and you can extract your classes in an easier way
Sep 18, 2015 at 7:57 comment added whatahitson Thanks @radouxju but that doesn't seem to change the result. I don't think its an extent issue because the holes in the small raster also appear in the output.
Sep 18, 2015 at 7:51 history edited radouxju CC BY-SA 3.0
added 140 characters in body
Sep 18, 2015 at 7:46 history answered radouxju CC BY-SA 3.0