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In ArcGIS, there is a tool called "Identity." Say you have a bunch of points. Some points fall in polygons of interest, some don't. Each polygon has a unique ID. This tool will add a field to the points and assign the unique ID of the polygon that contains it. Is there a tool that does this in QGIS?

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If you wanted to assign the ID's of the points that fall into polygons, try using the Join Attributes by Location tool:

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The plugin 'Point sampling tool' is an excellent plugin, that will let you pick any field from any vector polygon layer. The plugin also works on raster tables.

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