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I would like to implement a web editing environment where edits are posted to a version of a database (delta tables) not too default.

The idea behind this is so that any edits made through a web app would be looked over and posted to default by a GIS admin.

I have tried to publish a version of the data, but I get a "Feature service requires a registered database" error (code: 00090).

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As commented by @MichaelMiles-Stimson:

Google says http://resources.arcgis.com/en/help/main/10.1/index.html#//00sq000000m4000000 that should fix your problem with step-by-step instructions.

That is a link to the Online Help for 00090: requires a registered database:

You are either publishing a map service with Feature Access (feature service) capability, a WFS capable map service with transaction support (WFS-T), or an Image Service with editing capability enabled, and you have not registered an enterprise geodatabase with the ArcGIS server.

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