How do i merge different vector layers in to one shapefile layer
In QGIS version 2.6
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If you want to use the
Merge tool, the underlaying datasources must have the same projection, and must have the same datatype (point/line/polygon).
You can use
Save As... on one of your layers to create a new shapefile with the CRS of the other layer.
Copy and paste should work too if you set the target layer to edit mode.