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I have a workflow in FME in which I read some autocad files, do some transformations and output some shape files. My question is how can I merge the shape files with the same geometry and type of attributes? Is there a straight forward way to do this through FME?

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The fastest way is to create a generate a 'dynamic shapefile' reader and writer

This assumes that the shapefiles are one feature type.

File> Generate Workspace select your shapefiles workflow options (dynamic)

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Full documentation http://docs.safe.com/fme/2014beta/html/FME_Workbench/Default.htm#Filling_in_the_Workspace_Dialog.htm

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