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There is a Raster to NetCDF tool for converting raster to NetCDF using ArcGIS.

How do I append raster data as dimension to NetCDF using ArcGIS Desktop?

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netCDF4 is a python module than enables
you to modify add and create netcdf files.

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  • While this does not answer the original question at all (which asked for an ArcPy solution), it is a valuable hint that you can do this with open-source community Python tools, too. – j08lue Jun 18 '16 at 19:41

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