QGIS 2.10.1 Pisa
Message -> Error: Computed -srcwin 8208 142185 0 0 has negative width and/or height.
Tried with several different files and types of raster files [GeoTIFF, MrSis, ECW], the same msg with different numbers.
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Clipper and the other geoprocessing functions need to have all layers in the same coordinate reference system as they do not reproject them before they process the coordinates. That can leed to empty outputs, or much worse wrong outputs if the CRS are differing not much.