-1

OS : Ubuntu 16.04

Compilation using : ./configure && make

I encountered a fatal error while compiling SAGA-GIS 2.3.1 :

Making all in imagery_vigra
make[5]: Entering directory '/home/username/Downloads/saga-2.3.1/src/modules/imagery/imagery_vigra'
depbase=`echo vigra_random_forest.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/bash ../../../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../..    -fPIC -I../../../../src/saga_core -D_SAGA_LINUX -D_TYPEDEF_BYTE -D_TYPEDEF_WORD -D_SAGA_UNICODE  -fopenmp -lgomp -g -O2 -MT vigra_random_forest.lo -MD -MP -MF $depbase.Tpo -c -o vigra_random_forest.lo vigra_random_forest.cpp &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../../.. -fPIC -I../../../../src/saga_core -D_SAGA_LINUX -D_TYPEDEF_BYTE -D_TYPEDEF_WORD -D_SAGA_UNICODE -fopenmp -lgomp -g -O2 -MT vigra_random_forest.lo -MD -MP -MF .deps/vigra_random_forest.Tpo -c vigra_random_forest.cpp  -fPIC -DPIC -o .libs/vigra_random_forest.o
In file included from /usr/include/vigra/random_forest_hdf5_impex.hxx:41:0,
                 from vigra_random_forest.cpp:73:
/usr/include/vigra/hdf5impex.hxx:47:18: fatal error: hdf5.h: No such file or directory
compilation terminated.
Makefile:529: recipe for target 'vigra_random_forest.lo' failed
make[5]: *** [vigra_random_forest.lo] Error 1
make[5]: Leaving directory '/home/username/Downloads/saga-2.3.1/src/modules/imagery/imagery_vigra'
Makefile:393: recipe for target 'all-recursive' failed
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory '/home/username/Downloads/saga-2.3.1/src/modules/imagery'
Makefile:393: recipe for target 'all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory '/home/username/Downloads/saga-2.3.1/src/modules'
Makefile:393: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory '/home/username/Downloads/saga-2.3.1/src'
Makefile:499: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/home/username/Downloads/saga-2.3.1'
Makefile:410: recipe for target 'all' failed
make: *** [all] Error 2

I have installed these two dependencies before :

$ sudo apt-get install libvigraimpex5v5 libvigraimpex-dev

1

keep attention on configure output. Your problem could be solved with the dependencies satisfaction:

aptitude install libgdal-dev
aptitude install libwxgtk3.0-dev 
aptitude install libproj-dev
  • Right concept, but I'm not sure those are really the right dependencies for HDF5.... – BradHards Apr 16 '17 at 0:01

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy

Not the answer you're looking for? Browse other questions tagged or ask your own question.