Bottom Line Issue: The distances I get from NNJoin for the shortest distance from a point to the nearest polygon are several hundreds or even thousands of meters shorter than the distance I calculate using the "Measure Line" tool in QGIS. Any idea why these might be different?
More Details: First, I imported a shapefile of polygons (census designated places in US) and a text file of points (long-lat locations). Next, I projected them both into WGS/UTM Zone 11N (the relevant UTM zone where they are located). Finally, I used the NNJoin plugin to find the distance between each point and the nearest shapefile. However, the distances that NNJoin returns seem to be several hundred or even thousands of meters shorter than the distances I calculate using the Measure Line tool in QGIS (or doing the calculations using Google Maps). For example, NNJoin says the distance from a point called Brown's Gultch (lat: 41.834721, long: -115.97) to Owyhee, Nevada (nearest census designated place) is 2,391 meters. By contrast, the "Measure Line" tool indicates it is around ~2,600 meters.
Any idea what I am doing wrong?