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I have several shapefiles in a folder and all of them are points. What I want is to choose those that have more than two records.

I am using the ArcGIS ModelBuilder. I made an iterate feature class and then I made a get count that give me the number of rows for each shapefile. From this step I cannot do anything else. But I think the solution is to use one tool that has a logical condition and so let me just obtain the shapefiles that has more than 2 rows.

Any suggestions?

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You are on the right track, use branching logic on the get count variable, here is the If-Then-Else logic for branching logic page:

Using If-Then-Else logic for branching

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