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I am wondering if there is any effective method to shifting the polygon (to right hand side) to above the ridge in ArcScene?

It shifts around 60 meters which make my analysis inaccurate. Do you know how to solve this? I also attached the image in order to make you easier understandable what happens.

enter image description here

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You may try geo-reference the polygon,

i think with the small shift you have 1st order polynomial (using only one point) would be enough.

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