I have a binary raster containing boundary pixels with the value 1 (white) and no-boundary pixels with the value 0 (black):

enter image description here

I would like to vectorize the raster by keeping one center line trough the boundary pixels. However, most polygonize methods I tried (e.g., gdalogr:polygonize, result in two lines around the outline of the boundary pixels (red lines) or no output (saga:gridskeletonization): enter image description here

Did I miss any method with which this can be easily done? Or do I have to vectorize the raster first to a vector layer containing two parallel lines and find a way from there to skeletonize/centerline the two lines?


GRASS GIS is able do this.

You need two steps:

  1. r.thin

Thins non-null cells that denote linear features in a raster map layer.

  1. r.to.vect

Converts a raster map into a vector map.

  • Works for me after setting a nodata value to the raster with gdal_translate -a_nodata. – AndreJ Aug 8 '17 at 14:02
  • @RoVo s solution didn't entirely work for me. I was able to start r.thin after converting the binary raster with gdal_translate -ot INT32 src_dataset dst_dataset. It seems that similar conversions are often required before applying r.thin to avoid the error ERROR: Input raster must be of type CELL [see following link] (gis.stackexchange.com/questions/197145/…). However, when running r.to.vect on the raster created with r.thin, GRASS always stops working even when applied to small extents of the raster. – Sophie Crommelinck Sep 12 '17 at 7:30
  • That seems to be a different problem. – pLumo Sep 14 '17 at 15:47
  • Now it worked for me as @RoVo suggested. The problem were the no-data values. I changed these not with gdal_translate as @AndreJ suggests, but with mapcalc. I will post my answer containing the modules I used as a separate answer below. – Sophie Crommelinck Sep 19 '17 at 12:23
  • Came here with this issue some time later, having tried various centerline processes - but this GRASS solution worked PERFECTLY - thanks @RoVo – AlecZ Nov 21 '17 at 20:14

Now it worked for me as @RoVo suggested before. The problem were the no-data values in my input raster. I changed these not with gdal_translate as @AndreJ suggests (in comments of answer above), but with GRASS r.mapcalc. Here the modules that I used:

Replace all no data values:

                  {"amap": gPb_rlayer,
                   "formula": "if(A>0, 1, null())",
                   "GRASS_REGION_PARAMETER": "%f,%f,%f,%f" % (xmin, xmax, ymin, ymax),
                   "GRASS_REGION_CELLSIZE_PARAMETER": 1,
                   "outfile": mapcalc})

Thin raster layer to thin non-null cells:

                  {"input": mapcalc,
                   "GRASS_REGION_PARAMETER": "%f,%f,%f,%f" % (xmin, xmax, ymin, ymax),
                   "output": thinned})

Raster to vector conversion:

                  {"input": thinned,
                   "type": 0,
                   "GRASS_OUTPUT_TYPE_PARAMETER": 2,
                   "GRASS_REGION_PARAMETER": "%f,%f,%f,%f" % (xmin, xmax, ymin, ymax),
                   "output": centerlines})

enter image description here

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