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I have a shapefile of a city. My problem is that in the border, cells of the grids are not a complete square (500*500 m), while I need them to be complete as I need their centroids too. As it is shown for example in the picture, all cell in the border should be complete( not limited to the city border). The steps I followed is that through fishnet I created grids and then clipped it to the city border. How I can fix this issue? enter image description here

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Instead of clipping, use Select by Location (https://desktop.arcgis.com/en/arcmap/10.3/map/working-with-layers/using-select-by-location.htm). Use your grid as the target layer and your city layer as the source layer. Select features where they intersect the source layer feature (your city).

enter image description here

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