Some Sentinel-2B band images have slight spatial misalignments as I explained on the step forum. https://forum.step.esa.int/t/sentinel-2-tci-10m-level-2-images-slight-spatial-misregistrations/14235
Furthermore the gml/jp2 band image header goes uncorrected. I need to extract pixel values from these images as if they had been spatially aligned properly - e.g. by taking into account a 1 pixel vertical shift downwards.
Can I do this using command-line parameters to
gdalwarp : https://www.gdal.org/gdalwarp.html - the program I use to extract polygons of pixels?