I have a problem with GeoPandas sjoin
, I work with Ubuntu and I want to use:
opolskieadresy = geopandas.sjoin(smallopolskie, adresy, how="inner", op='intersects')
and i'm getting error:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/gis/.local/lib/python3.8/site-packages/geopandas/tools/sjoin.py", line 88, in sjoin
sindex = right_df.sindex
File "/home/gis/.local/lib/python3.8/site-packages/geopandas/base.py", line 593, in sindex
self._generate_sindex()
File "/home/gis/.local/lib/python3.8/site-packages/geopandas/base.py", line 98, in _generate_sindex
sindex_cls = get_sindex_class()
File "/home/gis/.local/lib/python3.8/site-packages/geopandas/sindex.py", line 42, in get_sindex_class
raise ImportError(
ImportError: Spatial indexes require either `rtree` or `pygeos`. See installation instructions at https://geopandas.org/install.html
When I try to install rtree: sudo pip3 install rtee I'm getting:
Collecting rtree
Using cached Rtree-0.9.4.tar.gz (62 kB)
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ib_695_y/rtree/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ib_695_y/rtree/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-install-ib_695_y/rtree/pip-egg-info
cwd: /tmp/pip-install-ib_695_y/rtree/
Complete output (15 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-ib_695_y/rtree/setup.py", line 3, in <module>
import rtree
File "/tmp/pip-install-ib_695_y/rtree/rtree/__init__.py", line 1, in <module>
from .index import Rtree
File "/tmp/pip-install-ib_695_y/rtree/rtree/index.py", line 6, in <module>
from . import core
File "/tmp/pip-install-ib_695_y/rtree/rtree/core.py", line 143, in <module>
rt.Error_GetLastErrorNum.restype = ctypes.c_int
File "/usr/lib/python3.8/ctypes/__init__.py", line 386, in __getattr__
func = self.__getitem__(name)
File "/usr/lib/python3.8/ctypes/__init__.py", line 391, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /usr/bin/python3: undefined symbol: Error_GetLastErrorNum
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
sudo pip3 install rtree
orsudo pip3 install pygeos