I found a way to extract data from Copernicus SciHub, but I'd love to find a way to automate to pre-processing in a Python script for both S2 and S1 data without having to use SNAP Desktop. Is there any way to use the algorithms like sen2cor so I can have a resulting geoTIFF?

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There's a python library for SNAP snappy. As far as I know, it is not yet supported in python 3+.

You can either install python 2.7 and configure SNAP, or a better way is to create anaconda virtual environment with python 2.7. This post explains how to do it.

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