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I downloaded same tile from AWS & Sentinel API. I compared pixel values for both and they differ by 1000. For example, consider red band. The value at 0,0 (row,column) for the image from Sentinel 2 is say 2242, then for same pixel the value for image from AWS is 1242. Why is this difference? From AWS & Sentinel API, I am downloading S2L2A product.

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I expect you are downloading a Sentinel 2 product published after January 2022. This is due to Sentinel 2 Processing Baseline breaking changes.

Sentinel Hub harmonizes data across multiple different Sentinel 2 Processing Baselines when users pick the default settings. This is so the changes like this don't affect users' existing processing pipelines.

You can find more about it in documentation and a forum post.

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