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I developed a model from a dataset where zmean and zpcum5 are continuous values, and V6 is categorical (evergreen, mixed, deciduous).

Lm3c.ranslope <- lmer(plotVol_sqrt ~ zmean + zpcum5 + I(zmean * zpcum5) + (1 + plotVol_sqrt|V6),
                      data = lidarDataSubset_B)

My SpatRaster stdMetricMerge_wVI_mcDif_Class is comprised of 3 layers (zmean, zpcum5, and V6). Like above, only V6 has levels: evergreen, mixed, deciduous. The other two are continuous (FLT4S)). When I try to run predict, I get an error.

VOL_w2w_ran.slope <- terra::predict(stdMetricMerge_wVI_mcDif_Class,
                                    model = Lm3c.ranslope,
                                    fun = predict,
                                    const = NULL)
Error in model.matrix.default(eval(substitute(~foo, list(foo = x[[2]]))),  : 
  model frame and formula mismatch in model.matrix()

Can I use predict for a mixed effects model that has continuous and factor, or is this a syntax error I'm missing?

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    Make sure that your categorical parameter is represented by a raster that is a factor. Take a look at the terra::as.factor function. Jan 30, 2023 at 22:55
  • thanks @JeffreyEvans, I just checked using is.factor(). V6 is a factor in both lidarDataSubset_B and stdMetricMerge_wVI_mcDif_Class. (and of course zmean and zpcum5 are num).
    – Ray J
    Jan 31, 2023 at 11:31
  • @JeffreyEvans I just saw the error in my model... my apologies but still thank you for your time.
    – Ray J
    Jan 31, 2023 at 11:58

1 Answer 1

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My model isn't set up correctly. This made it impossible for predict to work.

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