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I'm looking for something similar to the combine function from the ISelectionSet interface from ArcObject's SDK 10 .NET framework on a more scaled down level. Ergo, I don't plan on using that interface to combine objects that manage rows or features. If I need to I'll do a cast as some type of table like object, but nothing drawing from ArcObjects.

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The Geospatial Data Abstraction Library (GDAL) has bindings for Java.

It also includes a Python script for merging rasters: gdal_merge.py (source code here)

Lastly here is someone's take on a Java version of the gdal_merge tool.

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