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How can I deploy a custom WPS on deegree without using the UI?

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The deployment could be done with REST API: http://download.deegree.org/documentation/3.2.1/html/restapi.html

The service iself could be created according to: http://download.deegree.org/documentation/3.2.1/html/webservices.html#web-processing-service-wps

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