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Questions tagged [open-data-cube]

The Open Data Cube is a software tool that makes it easier to work with large holdings of Earth observation data.

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All-NaN slice encountered when apply xr_phenology function?

I want calculate vegetation phenology from ndvi netcdf dataset, I follow yours tutorials (DEA Australia and DEA Africa) to apply xr_phenology function , defined here. To avoid killed kernel of my ...
tazrart's user avatar
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1 vote
1 answer
44 views

DEA tools plotting module - can be applied to all xarray datasets? [closed]

I have a general question about the dea-tools plotting module. I am wondering if functions such as rgb can be applied generally to xarray datasets or if one must follow the method for loading in data (...
Eilish Brennan's user avatar
1 vote
0 answers
36 views

OpenDataCube / cube-in-a-box Installation Problem using PowerShell, Windows 10 [closed]

435.8 ERROR: Package 'deafrica-tools-2.3.2' requires a different Python: 3.8.10 not in '<3.12,>=3.9' failed to solve: process "/bin/sh -c cd /tmp && git clone --depth 1 https://...
Aim Alee's user avatar
0 votes
1 answer
44 views

Gridworkflow intersection with other spatial objects such as a geodataframe

I am working with a large GridWorkFlow object; I am not able to load all the tiles due to in-memory compute resources (24.00 GB mem 8 CPU) and do not need to either. I am interested in intersecting ...
rnnnn200333's user avatar
0 votes
1 answer
59 views

Digital Advisory Services for Rural Farmers using ML, GIS and RS [closed]

I am working on a GIS-based project to help with the delivery of advisory services to rural farmers. This project is demanding the use of Open-Data Cube and the SandBox environment. It is more like a ...
Joshua's user avatar
  • 1
1 vote
0 answers
46 views

AttributeError when running dc.load command (ESA WorldCover Classification Notebook)

This issue was raised at Git Hub a few months ago, but unfortunately, there is no solution so far. Therefore, I decided to post it here in the hope of attracting the StackExchange community. I am ...
Max Poltora's user avatar
1 vote
0 answers
96 views

Landsat from Planetary Computer unexpectedly turns up all no data in some regions

Using some code that gathers Landsat 8 collections from Microsoft Planetary Computer into Open Data Cube xarray using a stac search works fine in some regions but in others returns all nan values. ...
jeremyg19's user avatar
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1 answer
324 views

Loading data gives RuntimeWarning: invalid value encountered in cast

Here is my code import datacube from datacube.utils.cog import write_cog dc = datacube.Datacube(app="test_da") datasets = dc.find_datasets(product="test_da", ...
ishun's user avatar
  • 1
0 votes
1 answer
97 views

Exporting mean Sentinel-2 in Open Data Cube (ODC) for one time but multiple bands

A mean for a month of sentinel 2 data was created for 8 different bands. I want to write and download this image into a geotiff. But this code doesn't seem to work. # Compute a single mean from all ...
Colette's user avatar
2 votes
1 answer
64 views

Performance issues with Open Data Cube when `find_datasets` with a lot of results

Our ODC instance is deployed on AWS Aurora RDS and is populated with approximately 200 million datasets. The Aurora RDS is configured as Serverless v2 (64 - 128 ACUs) and has 4 replicas (1 writer + 3 ...
Sotosoul's user avatar
2 votes
1 answer
217 views

Import local STAC catalog to Open Data Cube

What's the best way to import my own COGS in an S3 bucket into ODC? I've currently used both PySTAC and RIO-STAC to generate local catalogs for S3 located tifs. Both methods produce jsons and the ...
Kurt Joy's user avatar
0 votes
2 answers
189 views

Add a polygon as a clip parameter for WMS and WCS layer in Datacube OWS

I am trying to add a clip as a parameter for a WMS and WCS URL end point, but couldn't clip based on a polygon. Adding bbox for WCS endpoint returns the bounding box, not the exact polygon as the name ...
Praj's user avatar
  • 1
3 votes
1 answer
549 views

Datacube ODC environment setup

Problem with ODC environment I am trying to setup datacube following this tutorial: https://docs.dea.ga.gov.au/notebooks/DEA_datasets/DEA_Water_Observations.html#Loading-data The first section of code ...
Jordan's user avatar
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1 vote
0 answers
79 views

Dask cluster stuck when loading data with Open Data Cube

I'm running an ODC instance indexing and loading Sentinel-2 L2A COGs from the Element84 bucket on AWS. I use a Dask.distributed cluster deployed in "fixed" mode, for the definition of "...
giob12's user avatar
  • 108
1 vote
0 answers
175 views

Overlapping Sentinel-2 Granules in AOI

Ive been working on a Sentinel-2 median dataset at the country level using Open Data Cube. While my methodology works fine for the majority of areas, it performs poorly where there is an overlap of S-...
Kurt's user avatar
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1 vote
0 answers
204 views

Ingesting Sentinel-1 dataset to opendatacube is not working

I was trying to ingest Sentinel-1 data to my docker container which i downloaded from github(cube-in-a-box). I launching container in aws ec2 machine. Before ingest data of Sentinel-1 I've already ...
kGummyBear's user avatar
2 votes
1 answer
165 views

dc.load return an empty dataset when using dimensions parameters (latitude-longitude or x-y)

I recently updated to version 1.8.6 of OpenDataCube and have issue with dc.load function. For example when running: ds = dc.load(product=product, longitude=(min_lon, max_lon), ...
bchate's user avatar
  • 31
0 votes
0 answers
147 views

ODC Installation issue

I've tried to install ODC on my local host but stuck on the UI installation step. After running this command: source datacube_env/bin/activate I got "no such file or directory" error. I ...
Edgar Sarkis's user avatar
0 votes
1 answer
171 views

Plotting Open Data Cube xarray data with two or more measurement parameters in the same axis

How can I plot the two measurement parameters (seasonal cover and permanent water cover) in the same axis as I want to compare them? I have this code: #load the cgls product ds_cgls_builtcover = dc....
Essy Maina's user avatar
1 vote
1 answer
241 views

How to index Water Observations Data in Open Data Cube

I would like to index Water Observations Data which stored in AWS into Open Data Cube. I tried to use datacube product add ./wo/ga_ls_wo_3.odc-product.yaml s3-to-dc --stac --no-sign-request "s3://...
Chenlu Hu's user avatar
1 vote
1 answer
140 views

Index USGS surface temperature datasets into Open Data Cube

I have recently indexed USGS surface reflectance products in my local ODC, with help from @Alex except for Landsat 9 datasets. Now I am trying to index the surface temperature product and compiled a ...
prpp2021's user avatar
  • 115
1 vote
1 answer
189 views

Download USGS datasets on either Australia or Africa sandbox

Is it possible to use my own AWS credentials to download a landsat8 dataset from USGS on either of the Sandbox (Africa/Australia)? I tried the following which didn't work: import boto3 from matplotlib....
prpp2021's user avatar
  • 115
0 votes
1 answer
249 views

Index USGS data Collection 2 in Open Data Cube

Indexing USGS Landsat Collection 2 Level 2 datasets into Open Data Cube Following the suggestion in the above URL, I tried to index USGS data into the Open Data Cube. Product definition was ...
prpp2021's user avatar
  • 115
1 vote
1 answer
254 views

Indexing data from Microsoft Planetary Computer in Open Data Cube

I would like to index into ODC some data from the Sentinel-2 dataset available on Microsoft Planetary Computer (PC). The main issue is with the PC's requirement of using tokens (SAS), which need to be ...
giob12's user avatar
  • 108
1 vote
1 answer
181 views

OSError: Failed to list error in Open Data Cube

I am trying to index sentinel-l2a-cogs following the guide here. The product definition is added to the database. (cubeenv) λ datacube product list s2_l2a Sentinel-2a and Sentinel-2b imagery, ...
Aman Bagrecha's user avatar
3 votes
2 answers
346 views

QGIS 3.20 and WMS-T is not passing the TIME parameter

I'm having trouble using QGIS version 3.20 on Mac OS with a WMS-T layer. The WMS service is available at https://ows.dea.ga.gov.au/wms. The specific layer I'm using is the DEA Land Cover layer, named ...
Alex Leith's user avatar
  • 13.5k
0 votes
1 answer
190 views

Error handling on missing dataset file

I'm working with the sentinel-2-l2a-cogs dataset hosted on AWS, trying to index some areas taking advantage of the STAC API provided by Element84. Unfortunately, I ran across the item ...
giob12's user avatar
  • 108
1 vote
2 answers
180 views

Querying for a list of products using geospatial extents within datacube

I have latitude longitude extents for an area that I'd like to conduct analysis on. ​ My goal is to determine what products exist within those latitude longitude extents. The documentation hints at ...
Conic's user avatar
  • 166
1 vote
1 answer
795 views

Create STAC catalog file for my s3 bucket

I have s3 private bucket which contains .tif files. Now, I need to create STAC file like the following: https://earth-search.aws.element84.com/v0 https://earthengine-stac.storage.googleapis.com/...
Cormogolov's user avatar
1 vote
2 answers
250 views

Indexing Copernicus Global Land Service data into ODC

I would like to index Copernicus Global Land Service data (that we can find in this site: https://land.copernicus.vgt.vito.be/manifest/) into Open Data Cube. How can I do it without the need to ...
Cormogolov's user avatar
0 votes
1 answer
103 views

Publish local ingested products and not using s3 bucket in [datacube-ows]

I am interested in publishing ingested product in my local Opendatacube instance. Everything working fine. As far I know datacube-ows provides capabilities to offer OGC web services. Reading its ...
u tyagi's user avatar
  • 123
2 votes
0 answers
64 views

Indexing USGS Landsat Collection 2 data in Open Data Cube [duplicate]

The USGS Landsat Collection 2 data has been released for a while and there's no clear way to index it into the Open Data Cube. Is there a prepare script or some other method that can be used to index ...
Cormogolov's user avatar
1 vote
1 answer
83 views

Can I use Copernicus Land Services data on Open Data Cube?

I need to use Copernicus Land services data (that I can take from the official website of Copernicus land: https://land.copernicus.eu/) on Open Data Cube. How can I do it? How can I index this data?
Cormogolov's user avatar
0 votes
1 answer
86 views

Datacube listing products fails 'Platform not in index'

ODC installation, Indexing and Ingestion complete for LANDSAT-8 SR products. Now trying to execute notebooks for Cloud statistics computation using data_cube_notebooks Responses of Notebook Cells ...
u tyagi's user avatar
  • 123
1 vote
1 answer
300 views

Error while indexing Sentinel 2 data on Open Data Cube

If I have sentinel 2 data: which .py file do I have to use to create dataset? which .yaml file do I have to use for product? I took file from these 3 providers (https://earthexplorer.usgs.gov/ , ...
Cormogolov's user avatar
0 votes
1 answer
114 views

psycopg2 error when running datacube -v system init

I followed the instructions from here. Open Data Cube core, version 1.8.6 Ubuntu 16.04 SQLAlchemy 1.4.27 After installation tried initialisation of database: $ datacube -v system init This ...
u tyagi's user avatar
  • 123
2 votes
1 answer
181 views

Indexing Multi-Band images in OpenDataCube

I have a Sentinel2 based product with the following product definition. It has 2 bands in it name: product_name description: Product Name metadata_type: eo3 metadata: product: name: '...
Arpit Kubadia 's user avatar
2 votes
1 answer
149 views

Indexing rasters generated through algorithms into Open Data Cube database

I'm getting familiar with Open Data Cube and its process to index EO data from different sources but I could not find any example of indexing products/datasets created by algorithms (i.e. running in ...
giob12's user avatar
  • 108
2 votes
1 answer
269 views

Data indexing from DEAfrica STAC is not working

I am trying to index some Sentinel-1 data from the DEAfric STAC catalogue and have added the product using the following command docker-compose exec jupyter datacube product add https://raw....
prpp2021's user avatar
  • 115
1 vote
0 answers
200 views

Open Data Cube: Local install of Cube in a Box indexing problems

I need to run ODC locally. I am trying to use the CIAB and following the instructions in its repo. I have failed a couple of times trying to index the examples. When I first executed the command ...
Nikko's user avatar
  • 611
2 votes
0 answers
93 views

Do the MTL.txt and ANG.txt need to be changed after reclassification using QGIS is done on one or two bands?

I had reclassified("Reclassify by table" in QGIS) the SWIR1 band value for a coastal erosion project to differentiate the land and the water better uisng QGIS and then replaced the SWIR1....
Qexpert's user avatar
  • 23
2 votes
1 answer
242 views

Unable to load the data product of Open Data Cube dataset image

I'm trying to load data product of the indexed Open Data Cube dataset image through the Jupyter Notebook. In this I'm using Resourcesat-2 AWiFS Data. The method used is shown below: import matplotlib....
Chhavi Tomar's user avatar
0 votes
1 answer
61 views

Fix location datacube-explorer

after indexing and add data to data cube. I want to show datasets in data cube-explorer but in the map affiche a wrong country how can I fix the location
Meriem's user avatar
  • 3
2 votes
2 answers
11k views

How to change certain values in an xarray depending on the coordinates

I have a Data Array with 4, 5 or 6 representing the classes: bare soil, vegetation and water. cube1 = <xarray.DataArray 'SCL_20m' (time: 5, y: 3, x: 3)> array([[[4., 6., 6.], [4., 4., ...
Nuria Agües's user avatar
0 votes
1 answer
130 views

Cannot install datacube-explorer 2.5.4 version

When I try to install datacube-explorer v2.5.4 after extract it to a directory, enter the directory, and pip install . I have this error
Meriem's user avatar
  • 3
0 votes
1 answer
124 views

Dataset documentation generation script for Landsat 8 collection 2 level 2 surface reflectance in ODC git repo fails to run [closed]

On running the script in the link below to generate the dataset documentation for data downloaded from USGS Landsat 8 Collection 2 Level 2, it ends in an error. ls_usgs_sr_l2.py script The error : ...
Qexpert's user avatar
  • 23
2 votes
4 answers
181 views

Partial data loading from the Open Data Cube is not working

I have deployed the cube in a box docker in our local environment and managed to index a couple of Sentinel-2 level 2 data. However, when I tried to load my AOI from those datasets I receive an empty ...
prpp2021's user avatar
  • 115
0 votes
0 answers
174 views

TopologicalError for Landsat 8 data on Open Data Cube

I've added Landsat 8 collection 2 level-2 dataset to Open Data Cube. While trying to access the dataset through the Jupyter Notebook with the following code, ds2 = dc.load(product='LC08_L2SP_T1', ...
Badal's user avatar
  • 329
1 vote
2 answers
255 views

Not able to plot Open Data Cube dataset image

I'm trying to plot the indexed Open Data Cube dataset image through the Jupyter Notebook. I'm using this demo notebook after making a clone of this repository on my local machine. The plot() method as ...
Badal's user avatar
  • 329
-3 votes
1 answer
49 views

Getting the right version of datacube-explorer [closed]

How can I get the right version of datacube-explorer-2.5.4? Because a try to install this one https://github.com/opendatacube/datacube-explorer/releases but doesn't work for me.
Meriem's user avatar
  • 3