Questions tagged [scipy.spatial]

Spatial algorithms and data structures from the SciPy library

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10
votes
1answer
2k views

Birch algorithm does not cluster as expected

I'm using Birch algorithm from scipy-learn Python package for clustering a set of points in one small city in sets of 10. I use following code: no = len(list_of_points)/10 brc = Birch(...
6
votes
2answers
3k views

Installing scipy.spatial with ArcPy gives DLL load failed error on import?

I am running python 2.7.6 from an ArcGIS installation. I have tried to install scipy from the Python Exchange Packages here, using the scipy-0.14.0.win32-py2.7.exe executable. I get no error importing ...
6
votes
1answer
2k views

Find shortest path between points avoiding shapefile?

I am an intermediate python developer with very limited GIS experience. I have a list of latitude/longitudes of a ship at sea. I need to join them into a polyline using the shortest distance between ...
4
votes
1answer
701 views

Polygon inner rings/holes issue

I am working on a script to smooth polygons. Essentially it, separates the inner and outer rings/polygons and send the coordinates to a smoothing def/function. The "smoothed" coordinates are then ...
3
votes
1answer
2k views

Classifying LiDAR ground points using laspy?

I have a classified LiDAR point cloud (.las) with misclassifications. The walls of steep surfaces that should be ground (class 2) have been misclassified as vegetation (classes 3, 4, 5). I am ...
3
votes
0answers
696 views

How to create a shapefile having Voronoi diagrams from the shapefile of an existing region?

I have a shapefile of a region and I want to generate random sub regions of that shapefile using Voronoi class of scipy.spatial package of Python. But I am a newbie to GIS. I found out about Voronoi ...
3
votes
0answers
602 views

Performing Grouping Analysis in QGIS? [duplicate]

Is there a QGIS tool that does the function of http://pro.arcgis.com/en/pro-app/tool-reference/spatial-statistics/grouping-analysis.htm MY NEED - I have about 15,000 points. I need them clustered in ...
2
votes
1answer
625 views

Where can I find the version of scipy python package used in QGIS Lyon 2.12?

I am using QGIS Pisa 2.10. I want to use the Voronio class of scipy.spatial in QGIS python console. QGIS Pisa has 0.11 version of scipy package. This package doesn't have Voronoi class. I even tried ...
2
votes
1answer
3k views

How do I import multiple tif images and save it as one tiff file with skimage or gdal in python?

I am new to Python and I am trying to import multiple tif images so that I can do image processing with skimage. I want to do image processing on a Landsat image to define linear features for a ...
2
votes
1answer
502 views

ImportError: cannot import scipy from windows powershell

I am having an importError message while trying to import scipy from powershell. But I am able to do this when I try to do this in the python shell in ArcGIS. The error I get is this: Traceback (...
2
votes
0answers
374 views

Converting points using FeatureClassToNumPyArray to interpolate cross-section with scipy “interpolate” [closed]

I'm trying to plot elevation cross section and extract elevations along a cross section using scipy's "interpolate" function. I'm converting a point feature class of profile elevation points to 2 ...
2
votes
0answers
4k views

Polygon of Voronoi cell using scipy.spatial?

I have points (e.g., lat, lon pairs of cell tower locations) and I need to get the polygon of the Voronoi cells they form. from scipy.spatial import Voronoi tower = [[ 24.686 , 46.7081], [ ...
1
vote
1answer
646 views

Python new packages installation with ArcGIS interpreter?

I would like to introduce some functions derived from scipyin my code. Since I also need arcpy, I use the Interpreter installed inside ArcGIS, whose directory is: (C:\Python27\ArcGIS10.3\python.exe). ...
1
vote
1answer
1k views

Invalid x dimension error in spatial point interpolation?

I have a point shapefile with altitude values. I have used gdal/ogr to open shapefile and read points(x,y) and altitude(z) values. It showing error when I am trying to interpolate with scipy griddata ...
1
vote
1answer
1k views

Interpolating point data using scipy/python is not covering rectangular extent

I am trying to write a python script with help of GDAL to a red point shapefile and considering a field value as z vales where I need interpolation to get raster with interpolated values. I am using ...
1
vote
1answer
367 views

How to calculate the raster statistics with polygon layer using numpy and scipy in python?

I have used zonal statistics from processing to calculate the raster statastics with polygon layer. processing.runalg('qgis:zonalstatistics', rlayersource, 1, vlayer, None, True, Path) But this is ...
1
vote
0answers
660 views

calculate difference between two interpolated grids using python [closed]

I'm trying to calculate difference between two interpolated grids. The grids are of different shapes, so cannot use np.subtract to calculate the difference. Any help on how to calculate the difference?...
1
vote
1answer
438 views

Calculating distances with SciPy and subsequently join identifiers

I have lots of start points and a handful of destination points. Using 'Point Distance' from the toolbox takes ages to calculate and write the results. Hence, I was looking for alternatives and went ...
0
votes
1answer
386 views

Fiona import error when updated to version 1.7

I would like to update scipy to version 0.19 as it has the nice calculate area of a convex hull method. When updating with conda, this updates fiona to version 1.7. Now I get an error trying to import ...