In the company I am working, we're using a subversion (svn) repository to store our files and work together on "things".

Using shapefiles for now we're looking to go over to gpkgs because it's more efficient and there's only 1 file instead of 4-5 (shp,shx,prj,... etc.).

The problem we're having is that or subversion "system" doesn't seem to like gpkgs because it's always updating files that weren't even touched or changed which leaves to conflicts in committing files.

Does this appear to somebody else and what was the solution? I am not really an IT-guys but I can ask our department if there's any needed information.