The specific condition (i.e., exceptions as named it) of this tool as connecting the variables is explained in [the respective help page][1] as follows: > The Raster Calculator tool generally follows the standard connectivity > behavior of models in ModelBuilder, with some exceptions resulting > from the requirements of formulating a valid Map Algebra expression. > These include the following: > > * Variables are connected to the Raster > Calculator tool **when they are selected from the list of variables**. All > variables are automatically listed in the Variable list inside the > tool. > >* When a dataset or variable is used in the expression, a link > between the variable and the tool will be created. If you remove the > variable from the expression, the associated link between the variable > and the tool will also be removed. > >* If you **delete the connection** to a > variable, the variable is **not removed** from the expression. >* You **should > not rename a variable** that is connected to the tool, since the > variable will not be renamed within the expression. If you do so, the > expression will be invalid. [1]: http://desktop.arcgis.com/en/arcmap/10.5/tools/spatial-analyst-toolbox/raster-calculator.htm