The raster package in R has the possibility to write a specific format using the function [writeRaster][1]. You can use for example GTiff. Here the short list of supported data formats. I assume you need a multiband format.

	Type 	Provider 	 extension 	Multiband support
	---------------------------------------------------------
	raster 	Native  	.grd 	 	Yes
	ascii 	ESRI Ascii 	.asc 	 	No
	SAGA 	SAGA GIS 	.sdat 	 	No
	IDRISI 	IDRISI  	.rst 	 	No
	CDF 	netCDF  	.nc 	 	Yes
	GTiff 	GeoTiff  	.tif 	 	Yes
	ENVI 	ENVI    	.envi 	 	Yes
	EHdr 	ESRI    	.bil 	 	Yes
	HFA 	Erdas   	.img 	 	Yes

  [1]: http://www.inside-r.org/packages/cran/raster/docs/writeRaster