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I think it is using the right point but is generalising the polygons differently. I tried comparing your isochrones up to 60 minutes: iso_orig <- osrmIsochrone(loc = c(locations$lon, locations$lat), breaks = seq(from = 0,to = 60, by = 10)) with the same location but only the first three break points, giving 2 features (actually I think the zero is not ...

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