0
votes
0answers
9 views

Unserialize socklist error when using rasterEngine in r

Basically, I am running the "rasterEngine" function in R. I want to use parallelization to change values in a raster image (I have around 400 images that I need to work on). However, the rasterEngine ...
0
votes
0answers
24 views

How to open a raw binary raster in QGIS or R

I have a raw binary raster without a file ending, and no header file. I would like to open this in either QGIS or R and then convert to geotiff, but opening it seems to be a challenge. Here is a ...
0
votes
1answer
31 views

Point-sampling rasters using R? [duplicate]

I need to be able to sample many raster files (imported from GeoTIFFs) using a previously defined set of spatial points, using R. What's the best way to do this?
2
votes
2answers
86 views

Extract Raster from Raster using Polygon shapefile in R

I am new to R and using the raster package. I have a problem extracting polygons from an existing raster file. If I use extract(raster, poly_shape) function on the raster it always creates a list ...
1
vote
1answer
44 views

How to deal with empty corners in raster when calculating fragmentation index

I have clipped buffer area around coordinate from one big raster (forest cover). Such created raster was loaded in R where PatchStat function (library SDMTools) gives fragmentation index. After ...
4
votes
2answers
89 views

Converting shapefile to raster: Character attributes

I've got a shapefile that I would like to convert into a raster, but the trick is that the attribute I want a raster version of is character data. I'm familiar with geoprocessing using GDAL (in the ...
2
votes
0answers
47 views

R raster Package Moran's I interpretation

I am using raster package to calculate the local Moran's I . The example gives the range of Moran's I between - 1 to 2.47. On my own data I have see the value range -3.070423 - 7.228558 How can ...
7
votes
1answer
92 views

How can I conduct Geographically Weighted Analysis using an exponential decay function?

I have some points (representing 30 study sites) and I want to calculate the weighted mean of several variables (landscape layers) using a negative exponential decay (weights function) to give more ...
2
votes
1answer
34 views

Plot a Raster in R with white space for NA values

I want to produce a .png of a raster with background values plotted as white space. Below you can see the current state of the plot. As you can tell, the pixels which should contain NA values, ...
3
votes
0answers
63 views

R Raster package loop over pixels

I want to perform a trend analysis for each pixel over it's time dimension. Therefore I wrote a loop over each pixel doing the calculation but this is extremely slow. I am sure there must be a faster ...
2
votes
0answers
92 views

Per-pixel calculations on a raster stack using GDAL

In R, it's relatively trivial to perform per pixel calculations based on a raster stack (e.g., get std.dev for each pixel on a 12 layer GeoTIFF). Unfortunately, the speed is less than desirable when ...
2
votes
3answers
79 views

How to reclassify only a part of a raster but keep the rest unchanged (ArcGIS or R)

I'm trying to reclassify only a certain part of a raster...not the entire raster. Here's the problem. I have a LULC raster of the entire US. There are some issues with the raster that I want to ...
0
votes
0answers
36 views

Dates are off when opening netcdf file in R

I have a netcdf file with the time dimension that goes from 12/2007 until 12/2010 with monthly time steps. I can see the correct dates in both arcgis and panoply. Panoply tells me this file is a ...
0
votes
1answer
63 views

How to load Georeferenced Scanned Maps in R

I have a geo-referenced scanned Map in GeoTiff format, which I would like to load into R. My intention is to plot some vector data (points and polygons) over this map using maptools package. Is ...
2
votes
1answer
88 views

how to extract a variable at specific time and depth from netcdf in r

I have the following netcdf file containing 7 variables and 4 dimensions. [1] "file data.nc has 4 dimensions:" [1] "depth Size: 12" [1] "time Size: 37" [1] "x Size: 305" [1] "y Size: 432" ...
1
vote
0answers
48 views

Write raster with its attribute table and symbology

I am classifying lots of rasters and I'd like to automate the legend creation and symbology displaying for easy manipulation. Here is the kind of raster I'm dealing with: library(raster) r <- ...
2
votes
3answers
132 views

How to get count of non-NA raster cells within polygon using R

I've been running into all sorts of issues using ArcGIS ZonalStats and thought R could be a great way. Saying that I'm fairly new to R, but got a coding background. The situation is that I have ...
1
vote
2answers
88 views

convert data.frame with no lat-long info to a raster

coders, I need to read in a .txt file into R and later do some spatial analyses on it. I’m working in R. 3.0.2 on a Windows server. I load the following libraries (probably more than I need): ...
1
vote
1answer
50 views

Convert point to grid: Numbers of cells differ

In R I am trying to aggregate points data to a grid. The data for the grid (G-Econ) comes as a csv-file. In this file each row represent a grid-cell at 1x1 degree resolution and the given ...
8
votes
3answers
173 views

R, rasterVis and RGL: how to prevent reflective surfaces?

I have been experimenting with digital terrain model files in ESRI ASCII grid raster format. Despite zero experience with this type of data I found it very easy to load into R, as per code below. The ...
0
votes
1answer
67 views

Summarize values from a raster brick by latitude bands in R

I would like to sumarize (sum and/or mean) values from layers on a raster brick based on latitude bands (been using raster package). Been looking at the package documentation and didn't find a way to ...
2
votes
2answers
48 views

How to find the second highest value in a rasterStack in R

I have a rasterStack of rasters representing count data. I want to return a single raster whose values are the index of the raster with the second highest value for each cell. (I used which.max for ...
1
vote
0answers
57 views

Making spatial clusters by direct manipulation of raster pixel values using R

I think this is an overambitious million dollar question, but I'm always optimistic when I pose a question even though I feel like I left no stone unturned! I've processed a raster layer with pixel ...
7
votes
3answers
198 views

R - How to sampleRandom() from large raster without NA values

I have a number of vary large rasters which need to be randomly sampled with the return value being a matrix of x, y, and value. The raster package sampleRandom(raster,n, na.rm=TRUE, xy=TRUE) will do ...
0
votes
1answer
144 views

Calculate area covered by a particular raster layer within polygons in QGIS

I am trying to extract information on vegetation cover within a set radius of point locations (my sites). I have succeeded in creating a new vector layer of circles with a 5 km radius around my sites. ...
2
votes
1answer
55 views

R - Efficient way to segment rasters into sub-regions and sample… without using extract()

My question is: Is there a more efficient way to sample from a sub-region (defined by a shapefile read into a spatial object) of multiple rasters without having to use extract() for each region on ...
1
vote
1answer
443 views

How to make RASTER from irregular point data without interpolation

I was trying to make a raster image from an irregularly spaced point database. The data looks like- > head(s100_ras) x y z 1 267573.9 2633781 213.29545 2 262224.4 2633781 ...
3
votes
2answers
265 views

Efficient way to handle NA values from analysis in R with Raster

I am not 100% sure if GIS is the correct stackexchange for this, but here we go. A problem I have been bested by: I have a raster layer of approximately 240 million cells. It could be a DEM or ...
4
votes
2answers
113 views

Problem overlapping shapefile and vector in R

I want to plot a shapefile over a raster file in R but I can't make them overlap perfectly: the raster appears to be rotated of few degrees counter-clockwise. Is it a problem with the projection? ...
2
votes
1answer
114 views

Convert multiple Shapefiles in Raster in R(and then plot it)

I'm trying to convert several shapefiles in rasters at the same time. I already was able to read the shapefiles by doing this: library(maptools) shps <- dir(getwd(), "*.shp") for (shp in shps) ...
1
vote
1answer
170 views

How to get custom color palette in rasterVis plot3D in R?

I am trying to insert an RColorBrewer palette to visualize an elevation raster in R using the rasterVis function plot3D. The rasterVis reference document shows the following parameters: plot3D(x, ...
0
votes
0answers
24 views

calculating mean and standard deviation for raster values using whole pixels within a polygon [duplicate]

i have a raster image and a corresponding shape file. i would like to calculate the statistics of the values within polygons which have a common attribute but only using pixels which are fully ...
0
votes
1answer
169 views

How to access each raster in a stack with a loop

I have a stack of rasters and I want to access each layer, combine each later with another file and finally export the resulting file as a csv file. Is there any way to do this with a loop? So far I ...
0
votes
1answer
71 views

How to convert 'RasterBrick' object to 'im' object in R?

During script execution I need to convert 'RasterBrick' to 'im' object. Package 'geostatsp' is supposed to do this job: library(geostatsp) myraster = raster(matrix(1:100,10,10), ...
5
votes
1answer
144 views

Legend of a raster map with categorical data

I would like to plot a raster containing 4 different values (1) with a categorical text legend describing the categories such as 2 but with colour boxes. I've tried using legend such as : legend( ...
2
votes
2answers
111 views

How to do regression analysis out-of-memory on a set of large rasters in R?

I am trying to do a regression analysis on a set of large rasters (254,004,000 cells each). Ultimately, I want to run something like the following (or a bit more complex, but let's start simple!): ...
0
votes
2answers
87 views

How can I fix a geoTiff with an incorrect CRS?

Trying to load and plot a raster (it's a DEM) in R, but having problems. Using R I read in a raster file: library(raster) dem <- raster("DEM_Victoria.tif") # >70 MB print(dem) class ...
2
votes
1answer
243 views

How to cluster Raster data

I have thousands of Raster data concerning the ice coverage at the pole at different times (days) over several years. Now I would like to perform a cluster analysis. I want to split the data into ...
4
votes
1answer
942 views

R - Plotting shapefile with geographical (raster) data

Over the last few days I have been trying to plot a shapefile over data loaded into a data.frame within R. It should be a view of radar precipitation with an overlay of the country borders from a ...
2
votes
1answer
103 views

How to work with flt & hdr files

I have been working on a vector-based spatial analysis in R using shapefiles. I wish to use some environmental data that is downloadable, however it is only available in raster format (FLT & HDR ...
1
vote
1answer
100 views

Retrieving the proportion of specific pixel class from CHM rasters

CHM = canopy height model I am very new to R (specially for GIS purposes) and I am struggling a bit in getting the following pixel statistics: Proportion of zero value pixels = [nº of zero value ...
1
vote
0answers
108 views

How to import binary arcgis maps into R

I have imported arcgis rasters into R. The rasters are binary maps and the legend in arcgis shows this to be binary as the colors are only 0 and 1. Now, when I import the raster into R it is no ...
2
votes
1answer
257 views

combine raster and polygon values in R

My question is similar to this one Get Raster Values from a Polygon Overlay in Opensource GIS Solutions but I think I need another step. I have a polygon layer of ecoregions which I brought into R ...
3
votes
1answer
192 views

Replace NA's with 0 for raster data using R

I am new in R. How can I replace NA's with 0 for my raster data which have spatial information?
3
votes
0answers
84 views

Can extracting raster values work in polygons' CRS without raster resampling?

I am trying to extract raster values using polygon layer with different CRS. Raster is in WGS84 (EPSG:4326) and the polygons in UTM (EPSG:23031). 1. If I want to work in the projection of the ...
0
votes
0answers
77 views

Why does a shapfile shift after transformation?

I have a shapefile created in the raster package (ER_14.3_2000_poly). > #read in a raster file > ER_14.3_2000<-raster('E:/Ecoregions Models/Outputs/ER_14.3/ER_14.3_ConsensusMap3.asc') > ...
2
votes
1answer
77 views

Several algorithms done for topographic correction => black spots - how to solve?

I have done several algorithms for topographic correction in R including simple cosine, Minnaert, SCS. The input data aspect and slope for the hillshade raster have correctly been done in radians. The ...
1
vote
1answer
160 views

How to save R raster plot for ArcGIS raster file

I want to save my raster plot that produced with R to ArcGIS raster (.img, .tif and ASCII) file.
3
votes
1answer
383 views

Setting extent and geographic projection in R

I have a raster and a shapefile that I am attempting to view and process in R. The shape file "ER_11.1" has the following specs: > ER_11.1 class : SpatialPolygonsDataFrame nfeatures : 22 ...
2
votes
1answer
275 views

extracting data from rasters using shapefile boundaries in r

I have a raster.stack of 8 environmental variables and a shapefile of Ecoregions for the southern U.S. files<-list.files(path='E:/Ecoregions Models/Border Bioclim/',pattern='asc', ...