Library of Congress (LoC) has a comprehensive and detailed list of (not only GIS) file formats with detailed information, between elso also considerations about long term use. LoC is an authority that can be cited in academic context and it's a great source for advice on any kind of data format.
See what they say e.g. for Geopackage sustainability:
In June 2020, the New South Wales State Archives lists GeoPackage 1.0
in its list of sustainable formats. The compilers of this resource
would welcome information about other recommendations for the
GeoPackage format from archival entities that collect and preserve
geospatial datasets. Comments welcome.
However, for technical reasons, Geopackage is not a format perfectly apt for archiving :
The SQLite DB Geopackage is based on is a complex binary format
(=disadvantage for archiving)
Source: Own translation from the german original, available in a presenatation by Markus Jobst for Geopackage Hackathon 05/2019, see slide 6 on the second pdf linked, called Geopackage Hackathon - Einführung
Despite of limitations, Shapefiles still have advantages for long term preservation in an academic context. See what LoC says on Shapefiles:
Among the archival institutions that list the Shapefile format as a
preferred or acceptable format are: the U.S. National Archives; the UK
Data Service; and the Data Archiving and Networked Services for the
Netherlands.
Adding to the previous answers, text formats are also adviced by another academic institution, the ETH (Swiss Federal Institute of Technology) for long term archiving: https://documentation.library.ethz.ch/display/RC/File+formats+for+archiving
Even though they have no special advice for GIS vector formats (TIFF as raster format luckily is included!), the general recommendations give some hints about what to be aware of - see especially the general section about Preparing your files, with tips (some obvious, others not) like:
Avoid password protection, encryption and compression, Avoid special
characters, Proper use of file extensions
For advice on GIS formats, see also: https://www.library.ucdavis.edu/guide/geospatial-data-for-storage-exchange/
For completion, this link helps to get an overview over existing GIS file formats and geospatial file extensions: https://gisgeography.com/gis-formats/