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If you are thinking about using this tag then perhaps reconsider whether your question would be better posted to Stack Overflow because "matplotlib is a python 2D plotting library" rather than GIS software.
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Saving plot from .nc file without showing the plot
Writing plt.close(fig) at the end of your script should avoid the plot from showing, while still saving the figure.
However I believe there is another problem in your script. You create a fig and ax b …